Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.87■□□□□ 0.93
VPS35Q96QK1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.87■□□□□ 0.93
VPS35Q96QK1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
VPS35Q96QK1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VPS35Q96QK1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS35Q96QK1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 AC016769.1-201ENST00000409132 1010 ntBASIC20.86■□□□□ 0.93
VPS35Q96QK1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
VPS35Q96QK1 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS35Q96QK1 FBXW4P1-201ENST00000426721 2239 ntBASIC20.85■□□□□ 0.93
VPS35Q96QK1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.85■□□□□ 0.93
VPS35Q96QK1 SLC7A5P1-201ENST00000568957 537 ntBASIC20.85■□□□□ 0.93
VPS35Q96QK1 AC120498.10-201ENST00000621827 505 ntBASIC20.85■□□□□ 0.93
VPS35Q96QK1 AC092437.1-201ENST00000624794 1048 ntBASIC20.85■□□□□ 0.93
VPS35Q96QK1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VPS35Q96QK1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS35Q96QK1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS35Q96QK1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS35Q96QK1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VPS35Q96QK1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS35Q96QK1 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
VPS35Q96QK1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.84■□□□□ 0.93
VPS35Q96QK1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS35Q96QK1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS35Q96QK1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS35Q96QK1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS35Q96QK1 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS35Q96QK1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS35Q96QK1 UBE2DNL-204ENST00000602536 740 ntBASIC20.84■□□□□ 0.93
VPS35Q96QK1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS35Q96QK1 KRT16P2-201ENST00000414673 1423 ntBASIC20.84■□□□□ 0.93
VPS35Q96QK1 AC061975.6-201ENST00000579045 1553 ntBASIC20.84■□□□□ 0.93
VPS35Q96QK1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS35Q96QK1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.83■□□□□ 0.93
VPS35Q96QK1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.83■□□□□ 0.93
VPS35Q96QK1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS35Q96QK1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.83■□□□□ 0.93
VPS35Q96QK1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS35Q96QK1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS35Q96QK1 IKBKGP1-201ENST00000612193 1073 ntBASIC20.83■□□□□ 0.93
VPS35Q96QK1 AC092666.2-201ENST00000613287 246 ntBASIC20.83■□□□□ 0.93
VPS35Q96QK1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.83■□□□□ 0.92
VPS35Q96QK1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.83■□□□□ 0.92
VPS35Q96QK1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS35Q96QK1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS35Q96QK1 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS35Q96QK1 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS35Q96QK1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS35Q96QK1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms