Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
FOXN4Q96NZ1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.79■□□□□ 0.6
FOXN4Q96NZ1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 AL162430.1-201ENST00000480705 870 ntBASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXN4Q96NZ1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
FOXN4Q96NZ1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
FOXN4Q96NZ1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.76■□□□□ 0.59
FOXN4Q96NZ1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXN4Q96NZ1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms