Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC15.71■□□□□ 0.11
LINC00477Q96M19 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC15.71■□□□□ 0.11
LINC00477Q96M19 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC15.71■□□□□ 0.11
LINC00477Q96M19 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC15.71■□□□□ 0.11
LINC00477Q96M19 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 MIR4767-201ENST00000582827 78 ntBASIC15.71■□□□□ 0.11
LINC00477Q96M19 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 NARF-205ENST00000412079 1760 ntTSL 5 BASIC15.71■□□□□ 0.11
LINC00477Q96M19 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC15.71■□□□□ 0.11
LINC00477Q96M19 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LINC00477Q96M19 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 IGHV3-19-201ENST00000521488 291 ntBASIC15.7■□□□□ 0.1
LINC00477Q96M19 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 STX5-203ENST00000394690 1568 ntTSL 5 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LINC00477Q96M19 ASL-203ENST00000380839 1765 ntTSL 5 BASIC15.7■□□□□ 0.1
LINC00477Q96M19 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 AL136162.1-201ENST00000607711 1078 ntBASIC15.69■□□□□ 0.1
LINC00477Q96M19 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC15.69■□□□□ 0.1
LINC00477Q96M19 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LINC00477Q96M19 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 FXN-202ENST00000396364 980 ntTSL 5 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 LINC01521-201ENST00000504184 1943 ntBASIC15.68■□□□□ 0.1
LINC00477Q96M19 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC15.68■□□□□ 0.1
LINC00477Q96M19 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LINC00477Q96M19 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC15.67■□□□□ 0.1
LINC00477Q96M19 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC15.67■□□□□ 0.1
LINC00477Q96M19 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LINC00477Q96M19 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LINC00477Q96M19 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.67■□□□□ 0.1
LINC00477Q96M19 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LINC00477Q96M19 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms