Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF540Q8NDQ6 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF540Q8NDQ6 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
ZNF540Q8NDQ6 C17orf82-201ENST00000623772 1530 ntBASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ZNF540Q8NDQ6 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 AL049796.1-201ENST00000565336 1766 ntBASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 DUX4L19-201ENST00000557448 1267 ntBASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 AC092171.4-201ENST00000609130 632 ntBASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 AC106739.1-201ENST00000617035 715 ntBASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
ZNF540Q8NDQ6 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.33■□□□□ 0.69
ZNF540Q8NDQ6 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
ZNF540Q8NDQ6 AL391422.3-201ENST00000603791 2761 ntBASIC19.33■□□□□ 0.69
ZNF540Q8NDQ6 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZNF540Q8NDQ6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZNF540Q8NDQ6 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZNF540Q8NDQ6 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
ZNF540Q8NDQ6 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 PBX2P1-201ENST00000493219 1291 ntBASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.33■□□□□ 0.68
ZNF540Q8NDQ6 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms