Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 AL138724.1-201ENST00000606771 1088 ntBASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.33■□□□□ 0.36
PDLIM3Q53GG5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 AC245100.8-202ENST00000629247 1058 ntBASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM3Q53GG5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
PDLIM3Q53GG5 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 Z98882.1-201ENST00000622160 2253 ntBASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM3Q53GG5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 AC123595.1-201ENST00000440769 1046 ntBASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 NTF6G-201ENST00000591094 616 ntBASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 AC104771.1-201ENST00000603335 964 ntBASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM3Q53GG5 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms