Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX2P48431 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
SOX2P48431 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SOX2P48431 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.45■□□□□ 0.54
SOX2P48431 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.45■□□□□ 0.54
SOX2P48431 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.45■□□□□ 0.54
SOX2P48431 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SOX2P48431 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.44■□□□□ 0.54
SOX2P48431 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.44■□□□□ 0.54
SOX2P48431 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.44■□□□□ 0.54
SOX2P48431 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.44■□□□□ 0.54
SOX2P48431 MIR3621-201ENST00000580529 85 ntBASIC18.44■□□□□ 0.54
SOX2P48431 AC092171.4-201ENST00000609130 632 ntBASIC18.44■□□□□ 0.54
SOX2P48431 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.44■□□□□ 0.54
SOX2P48431 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.44■□□□□ 0.54
SOX2P48431 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
SOX2P48431 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SOX2P48431 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SOX2P48431 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SOX2P48431 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SOX2P48431 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.43■□□□□ 0.54
SOX2P48431 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.43■□□□□ 0.54
SOX2P48431 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
SOX2P48431 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SOX2P48431 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.43■□□□□ 0.54
SOX2P48431 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX2P48431 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.43■□□□□ 0.54
SOX2P48431 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.43■□□□□ 0.54
SOX2P48431 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.43■□□□□ 0.54
SOX2P48431 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SOX2P48431 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.43■□□□□ 0.54
SOX2P48431 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SOX2P48431 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SOX2P48431 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX2P48431 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.42■□□□□ 0.54
SOX2P48431 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX2P48431 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX2P48431 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX2P48431 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.42■□□□□ 0.54
SOX2P48431 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.42■□□□□ 0.54
SOX2P48431 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX2P48431 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX2P48431 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX2P48431 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SOX2P48431 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
SOX2P48431 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.41■□□□□ 0.54
SOX2P48431 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
SOX2P48431 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.41■□□□□ 0.54
SOX2P48431 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SOX2P48431 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.41■□□□□ 0.54
SOX2P48431 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.41■□□□□ 0.54
SOX2P48431 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SOX2P48431 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.41■□□□□ 0.54
SOX2P48431 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
SOX2P48431 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.41■□□□□ 0.54
SOX2P48431 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SOX2P48431 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX2P48431 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SOX2P48431 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX2P48431 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX2P48431 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.4■□□□□ 0.54
SOX2P48431 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SOX2P48431 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SOX2P48431 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SOX2P48431 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX2P48431 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX2P48431 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SOX2P48431 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.39■□□□□ 0.54
SOX2P48431 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX2P48431 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.39■□□□□ 0.53
SOX2P48431 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX2P48431 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms