Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
MSX2P35548 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
MSX2P35548 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX2P35548 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.04■□□□□ 0.8
MSX2P35548 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.04■□□□□ 0.8
MSX2P35548 AC133637.1-201ENST00000624115 1537 ntBASIC20.04■□□□□ 0.8
MSX2P35548 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX2P35548 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX2P35548 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MSX2P35548 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.04■□□□□ 0.8
MSX2P35548 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX2P35548 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX2P35548 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MSX2P35548 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
MSX2P35548 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX2P35548 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX2P35548 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX2P35548 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
MSX2P35548 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX2P35548 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MSX2P35548 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.03■□□□□ 0.8
MSX2P35548 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX2P35548 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
MSX2P35548 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
MSX2P35548 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSX2P35548 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
MSX2P35548 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.03■□□□□ 0.8
MSX2P35548 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MSX2P35548 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSX2P35548 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX2P35548 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSX2P35548 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSX2P35548 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
MSX2P35548 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSX2P35548 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX2P35548 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX2P35548 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSX2P35548 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX2P35548 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.02■□□□□ 0.79
MSX2P35548 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
MSX2P35548 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSX2P35548 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
MSX2P35548 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.02■□□□□ 0.79
MSX2P35548 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
MSX2P35548 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.02■□□□□ 0.79
MSX2P35548 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSX2P35548 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX2P35548 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.01■□□□□ 0.79
MSX2P35548 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX2P35548 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSX2P35548 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
MSX2P35548 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX2P35548 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX2P35548 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
MSX2P35548 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MSX2P35548 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
MSX2P35548 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20■□□□□ 0.79
MSX2P35548 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20■□□□□ 0.79
MSX2P35548 MTDHP2-201ENST00000601468 714 ntBASIC20■□□□□ 0.79
MSX2P35548 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MSX2P35548 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSX2P35548 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20■□□□□ 0.79
MSX2P35548 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
MSX2P35548 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.99■□□□□ 0.79
MSX2P35548 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
MSX2P35548 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.99■□□□□ 0.79
MSX2P35548 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 AC027702.1-201ENST00000563810 1770 ntBASIC19.99■□□□□ 0.79
MSX2P35548 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 AC006455.2-201ENST00000429931 906 ntBASIC19.99■□□□□ 0.79
MSX2P35548 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.99■□□□□ 0.79
MSX2P35548 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
MSX2P35548 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSX2P35548 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
MSX2P35548 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.98■□□□□ 0.79
MSX2P35548 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX2P35548 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX2P35548 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSX2P35548 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.98■□□□□ 0.79
MSX2P35548 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX2P35548 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms