Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
HMGA1P17096 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 ABHD17AP1-201ENST00000358206 933 ntBASIC21.96■■□□□ 1.11
HMGA1P17096 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGA1P17096 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HMGA1P17096 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HMGA1P17096 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.96■■□□□ 1.11
HMGA1P17096 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGA1P17096 CD99P1-205ENST00000527459 561 ntBASIC21.96■■□□□ 1.11
HMGA1P17096 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.96■■□□□ 1.11
HMGA1P17096 KRT18P6-201ENST00000555540 1265 ntBASIC21.96■■□□□ 1.11
HMGA1P17096 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.96■■□□□ 1.11
HMGA1P17096 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.96■■□□□ 1.11
HMGA1P17096 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HMGA1P17096 GUSBP5-202ENST00000510805 1989 ntBASIC21.96■■□□□ 1.11
HMGA1P17096 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
HMGA1P17096 AC233723.2-201ENST00000623798 2106 ntBASIC21.95■■□□□ 1.11
HMGA1P17096 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.95■■□□□ 1.1
HMGA1P17096 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HMGA1P17096 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.95■■□□□ 1.1
HMGA1P17096 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.95■■□□□ 1.1
HMGA1P17096 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
HMGA1P17096 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HMGA1P17096 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.94■■□□□ 1.1
HMGA1P17096 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 RARRES2P4-201ENST00000514074 484 ntBASIC21.94■■□□□ 1.1
HMGA1P17096 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGA1P17096 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGA1P17096 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGA1P17096 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
HMGA1P17096 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGA1P17096 AC091799.1-201ENST00000422823 811 ntBASIC21.93■■□□□ 1.1
HMGA1P17096 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGA1P17096 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.93■■□□□ 1.1
HMGA1P17096 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGA1P17096 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGA1P17096 MIR4758-201ENST00000577688 71 ntBASIC21.93■■□□□ 1.1
HMGA1P17096 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGA1P17096 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGA1P17096 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.93■■□□□ 1.1
HMGA1P17096 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.92■■□□□ 1.1
HMGA1P17096 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
HMGA1P17096 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.92■■□□□ 1.1
HMGA1P17096 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGA1P17096 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGA1P17096 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.91■■□□□ 1.1
HMGA1P17096 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGA1P17096 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGA1P17096 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
HMGA1P17096 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGA1P17096 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
HMGA1P17096 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.91■■□□□ 1.1
HMGA1P17096 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGA1P17096 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGA1P17096 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGA1P17096 AC010980.2-201ENST00000587099 1412 ntBASIC21.9■■□□□ 1.1
HMGA1P17096 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGA1P17096 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGA1P17096 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGA1P17096 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGA1P17096 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGA1P17096 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGA1P17096 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
HMGA1P17096 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGA1P17096 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGA1P17096 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.9■■□□□ 1.1
HMGA1P17096 AC092118.2-201ENST00000613495 667 ntBASIC21.9■■□□□ 1.1
HMGA1P17096 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms