Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
TPM1P09493 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TPM1P09493 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
TPM1P09493 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
TPM1P09493 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.28
TPM1P09493 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
TPM1P09493 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
TPM1P09493 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.07■■□□□ 1.28
TPM1P09493 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TPM1P09493 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.07■■□□□ 1.28
TPM1P09493 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TPM1P09493 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TPM1P09493 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.07■■□□□ 1.28
TPM1P09493 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TPM1P09493 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.07■■□□□ 1.28
TPM1P09493 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TPM1P09493 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.07■■□□□ 1.28
TPM1P09493 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC23.06■■□□□ 1.28
TPM1P09493 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC23.06■■□□□ 1.28
TPM1P09493 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 SRD5A1P1-201ENST00000442297 786 ntBASIC23.06■■□□□ 1.28
TPM1P09493 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.06■■□□□ 1.28
TPM1P09493 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.06■■□□□ 1.28
TPM1P09493 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.06■■□□□ 1.28
TPM1P09493 AC003102.1-202ENST00000563394 1796 ntBASIC23.06■■□□□ 1.28
TPM1P09493 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.06■■□□□ 1.28
TPM1P09493 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.06■■□□□ 1.28
TPM1P09493 LINC01006-201ENST00000333319 2292 ntBASIC23.06■■□□□ 1.28
TPM1P09493 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.06■■□□□ 1.28
TPM1P09493 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TPM1P09493 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
TPM1P09493 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
TPM1P09493 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
TPM1P09493 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TPM1P09493 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TPM1P09493 AC007952.6-201ENST00000573168 2673 ntBASIC23.05■■□□□ 1.28
TPM1P09493 AC003957.1-201ENST00000625108 2673 ntBASIC23.05■■□□□ 1.28
TPM1P09493 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TPM1P09493 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.05■■□□□ 1.28
TPM1P09493 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TPM1P09493 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.05■■□□□ 1.28
TPM1P09493 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TPM1P09493 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.04■■□□□ 1.28
TPM1P09493 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
TPM1P09493 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TPM1P09493 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.04■■□□□ 1.28
TPM1P09493 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
TPM1P09493 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TPM1P09493 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TPM1P09493 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TPM1P09493 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
TPM1P09493 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TPM1P09493 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TPM1P09493 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TPM1P09493 FEM1AP1-201ENST00000431297 1995 ntBASIC23.03■■□□□ 1.28
TPM1P09493 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
TPM1P09493 AIRN-201ENST00000601203 4374 ntBASIC23.03■■□□□ 1.28
TPM1P09493 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
TPM1P09493 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
TPM1P09493 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.03■■□□□ 1.28
TPM1P09493 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.03■■□□□ 1.28
TPM1P09493 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.03■■□□□ 1.28
TPM1P09493 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.03■■□□□ 1.28
TPM1P09493 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
TPM1P09493 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.03■■□□□ 1.28
TPM1P09493 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
TPM1P09493 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
TPM1P09493 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
TPM1P09493 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.03■■□□□ 1.28
TPM1P09493 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
TPM1P09493 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TPM1P09493 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC23.02■■□□□ 1.28
TPM1P09493 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TPM1P09493 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TPM1P09493 AC010525.1-201ENST00000585559 441 ntBASIC23.02■■□□□ 1.28
TPM1P09493 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TPM1P09493 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TPM1P09493 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TPM1P09493 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TPM1P09493 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.02■■□□□ 1.28
TPM1P09493 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC23.02■■□□□ 1.27
TPM1P09493 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
TPM1P09493 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TPM1P09493 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms