Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AC003102.1-202ENST00000563394 1796 ntBASIC20.74■□□□□ 0.91
SNX3O60493 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.74■□□□□ 0.91
SNX3O60493 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SNX3O60493 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX3O60493 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SNX3O60493 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX3O60493 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.73■□□□□ 0.91
SNX3O60493 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SNX3O60493 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SNX3O60493 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 AL512408.1-201ENST00000569378 2000 ntBASIC20.73■□□□□ 0.91
SNX3O60493 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX3O60493 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
SNX3O60493 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.72■□□□□ 0.91
SNX3O60493 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.72■□□□□ 0.91
SNX3O60493 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SNX3O60493 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.72■□□□□ 0.91
SNX3O60493 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.71■□□□□ 0.91
SNX3O60493 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.71■□□□□ 0.91
SNX3O60493 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.71■□□□□ 0.91
SNX3O60493 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.71■□□□□ 0.91
SNX3O60493 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.71■□□□□ 0.91
SNX3O60493 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.71■□□□□ 0.91
SNX3O60493 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.71■□□□□ 0.91
SNX3O60493 AC007225.1-201ENST00000566331 1836 ntBASIC20.71■□□□□ 0.91
SNX3O60493 AC098818.2-201ENST00000564925 2320 ntBASIC20.71■□□□□ 0.91
SNX3O60493 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SNX3O60493 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.71■□□□□ 0.91
SNX3O60493 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SNX3O60493 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
SNX3O60493 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNX3O60493 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNX3O60493 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SNX3O60493 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SNX3O60493 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNX3O60493 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SNX3O60493 DUX4L18-201ENST00000553347 1267 ntBASIC20.7■□□□□ 0.9
SNX3O60493 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.7■□□□□ 0.9
SNX3O60493 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SNX3O60493 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SNX3O60493 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SNX3O60493 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SNX3O60493 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SNX3O60493 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.69■□□□□ 0.9
SNX3O60493 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 AC099778.1-201ENST00000568593 1911 ntBASIC20.69■□□□□ 0.9
SNX3O60493 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.69■□□□□ 0.9
SNX3O60493 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.69■□□□□ 0.9
SNX3O60493 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.69■□□□□ 0.9
SNX3O60493 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.69■□□□□ 0.9
SNX3O60493 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SNX3O60493 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SNX3O60493 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.69■□□□□ 0.9
SNX3O60493 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SNX3O60493 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.68■□□□□ 0.9
SNX3O60493 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SNX3O60493 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SNX3O60493 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SNX3O60493 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
SNX3O60493 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms