Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TCRBV3S1A0A5B6 AC007225.1-201ENST00000566331 1836 ntBASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 YBX1P4-201ENST00000392794 808 ntBASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 AL031848.2-201ENST00000607670 837 ntBASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 AC092028.1-203ENST00000608262 953 ntBASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV3S1A0A5B6 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 AC121338.2-201ENST00000622535 1744 ntBASIC19.71■□□□□ 0.75
TCRBV3S1A0A5B6 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 BX664725.1-201ENST00000438252 379 ntBASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 AC010141.3-201ENST00000456659 717 ntBASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 AC241377.3-202ENST00000626088 1088 ntBASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 AC241585.3-202ENST00000628937 1088 ntBASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 AC245100.8-202ENST00000629247 1058 ntBASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV3S1A0A5B6 KRT8P33-201ENST00000508125 1423 ntBASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 AC112907.3-201ENST00000577781 2400 ntBASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 AC087239.1-201ENST00000622671 572 ntBASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV3S1A0A5B6 AL512408.1-201ENST00000569378 2000 ntBASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV3S1A0A5B6 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.67■□□□□ 0.74
TCRBV3S1A0A5B6 pRNA.6-201ENST00000610482 90 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms