Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 GUSBP6-202ENST00000438529 1198 ntBASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 AC061975.6-201ENST00000579045 1553 ntBASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
TRAV40A0A0B4J280 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
TRAV40A0A0B4J280 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.34
TRAV40A0A0B4J280 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRAV40A0A0B4J280 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 AC007322.4-201ENST00000509611 723 ntBASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV40A0A0B4J280 AC026471.6-201ENST00000622954 1905 ntBASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 AC068338.2-201ENST00000563278 1430 ntBASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 FAM99A-202ENST00000538190 1989 ntBASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 AL138781.1-201ENST00000566567 1274 ntBASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 AC142086.2-201ENST00000569753 217 ntBASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV40A0A0B4J280 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 AC133552.2-202ENST00000575694 574 ntBASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 AC069236.1-201ENST00000604339 616 ntBASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 AC008694.1-202ENST00000636953 945 ntBASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV40A0A0B4J280 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 AC010542.4-201ENST00000563151 1910 ntBASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRAV40A0A0B4J280 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms