Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHA3Q9Y5H8 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 AC055733.4-201ENST00000638462 1354 ntBASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 LINC01521-201ENST00000504184 1943 ntBASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHA3Q9Y5H8 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHA3Q9Y5H8 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
PCDHA3Q9Y5H8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
PCDHA3Q9Y5H8 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC22.02■■□□□ 1.11
PCDHA3Q9Y5H8 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
PCDHA3Q9Y5H8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHA3Q9Y5H8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 AC008764.7-201ENST00000593779 1081 ntBASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHA3Q9Y5H8 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.99■■□□□ 1.11
PCDHA3Q9Y5H8 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 FEM1AP1-201ENST00000431297 1995 ntBASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 AC131212.1-201ENST00000613771 668 ntBASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHA3Q9Y5H8 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHA3Q9Y5H8 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHA3Q9Y5H8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHA3Q9Y5H8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms