Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SCN3AQ9NY46 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SCN3AQ9NY46 SLC7A5P2-201ENST00000553010 536 ntBASIC20.02■□□□□ 0.79
SCN3AQ9NY46 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 AC061975.6-201ENST00000579045 1553 ntBASIC20.01■□□□□ 0.79
SCN3AQ9NY46 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SCN3AQ9NY46 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20■□□□□ 0.79
SCN3AQ9NY46 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20■□□□□ 0.79
SCN3AQ9NY46 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20■□□□□ 0.79
SCN3AQ9NY46 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 Z98882.1-201ENST00000622160 2253 ntBASIC20■□□□□ 0.79
SCN3AQ9NY46 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20■□□□□ 0.79
SCN3AQ9NY46 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20■□□□□ 0.79
SCN3AQ9NY46 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20■□□□□ 0.79
SCN3AQ9NY46 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20■□□□□ 0.79
SCN3AQ9NY46 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20■□□□□ 0.79
SCN3AQ9NY46 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 AC004911.1-201ENST00000416316 871 ntBASIC20■□□□□ 0.79
SCN3AQ9NY46 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SCN3AQ9NY46 AC010141.2-201ENST00000452426 721 ntBASIC20■□□□□ 0.79
SCN3AQ9NY46 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20■□□□□ 0.79
SCN3AQ9NY46 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20■□□□□ 0.79
SCN3AQ9NY46 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SCN3AQ9NY46 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20■□□□□ 0.79
SCN3AQ9NY46 AC026310.3-201ENST00000625186 2373 ntBASIC19.99■□□□□ 0.79
SCN3AQ9NY46 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 AC092666.2-201ENST00000613287 246 ntBASIC19.99■□□□□ 0.79
SCN3AQ9NY46 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SCN3AQ9NY46 KRT18P20-201ENST00000548986 1279 ntBASIC19.98■□□□□ 0.79
SCN3AQ9NY46 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SCN3AQ9NY46 AF106564.1-201ENST00000607058 2553 ntBASIC19.97■□□□□ 0.79
SCN3AQ9NY46 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 AC008175.2-201ENST00000612840 297 ntBASIC19.97■□□□□ 0.79
SCN3AQ9NY46 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 MYCNOS-205ENST00000641950 531 ntBASIC19.97■□□□□ 0.79
SCN3AQ9NY46 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.97■□□□□ 0.79
SCN3AQ9NY46 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN3AQ9NY46 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms