Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MYCNOS-205ENST00000641950 531 ntBASIC18.53■□□□□ 0.56
LIME1Q9H400 AC133041.1-202ENST00000642053 222 ntBASIC18.53■□□□□ 0.56
LIME1Q9H400 C11orf96-202ENST00000528572 1834 ntBASIC18.53■□□□□ 0.56
LIME1Q9H400 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.52■□□□□ 0.56
LIME1Q9H400 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.52■□□□□ 0.56
LIME1Q9H400 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 AC087742.1-201ENST00000575880 1738 ntBASIC18.52■□□□□ 0.56
LIME1Q9H400 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 AC092053.2-201ENST00000640557 1818 ntBASIC18.52■□□□□ 0.56
LIME1Q9H400 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LIME1Q9H400 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
LIME1Q9H400 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.52■□□□□ 0.56
LIME1Q9H400 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIME1Q9H400 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIME1Q9H400 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIME1Q9H400 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIME1Q9H400 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
LIME1Q9H400 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIME1Q9H400 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LIME1Q9H400 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.51■□□□□ 0.55
LIME1Q9H400 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIME1Q9H400 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
LIME1Q9H400 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIME1Q9H400 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LIME1Q9H400 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIME1Q9H400 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.51■□□□□ 0.55
LIME1Q9H400 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.51■□□□□ 0.55
LIME1Q9H400 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
LIME1Q9H400 CNN2P6-201ENST00000439038 900 ntBASIC18.51■□□□□ 0.55
LIME1Q9H400 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.51■□□□□ 0.55
LIME1Q9H400 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.51■□□□□ 0.55
LIME1Q9H400 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LIME1Q9H400 AP001160.3-201ENST00000601484 763 ntBASIC18.51■□□□□ 0.55
LIME1Q9H400 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIME1Q9H400 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIME1Q9H400 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.5■□□□□ 0.55
LIME1Q9H400 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.5■□□□□ 0.55
LIME1Q9H400 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.5■□□□□ 0.55
LIME1Q9H400 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.5■□□□□ 0.55
LIME1Q9H400 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIME1Q9H400 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
LIME1Q9H400 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
LIME1Q9H400 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.5■□□□□ 0.55
LIME1Q9H400 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LIME1Q9H400 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LIME1Q9H400 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.49■□□□□ 0.55
LIME1Q9H400 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIME1Q9H400 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
LIME1Q9H400 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LIME1Q9H400 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.49■□□□□ 0.55
LIME1Q9H400 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.49■□□□□ 0.55
LIME1Q9H400 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.49■□□□□ 0.55
LIME1Q9H400 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.48■□□□□ 0.55
LIME1Q9H400 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIME1Q9H400 POU5F1P3-201ENST00000428824 1078 ntBASIC18.48■□□□□ 0.55
LIME1Q9H400 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.48■□□□□ 0.55
LIME1Q9H400 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.48■□□□□ 0.55
LIME1Q9H400 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
LIME1Q9H400 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
LIME1Q9H400 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
LIME1Q9H400 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LIME1Q9H400 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIME1Q9H400 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIME1Q9H400 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIME1Q9H400 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.47■□□□□ 0.55
LIME1Q9H400 RNA5SP413-201ENST00000516373 109 ntBASIC18.47■□□□□ 0.55
LIME1Q9H400 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.47■□□□□ 0.55
LIME1Q9H400 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.47■□□□□ 0.55
LIME1Q9H400 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.47■□□□□ 0.55
LIME1Q9H400 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIME1Q9H400 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms