Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TIMP4Q99727 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TIMP4Q99727 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.35■□□□□ 0.69
TIMP4Q99727 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.35■□□□□ 0.69
TIMP4Q99727 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TIMP4Q99727 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TIMP4Q99727 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TIMP4Q99727 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
TIMP4Q99727 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.34■□□□□ 0.69
TIMP4Q99727 AC006015.1-201ENST00000429970 570 ntBASIC19.34■□□□□ 0.69
TIMP4Q99727 AC090192.1-201ENST00000517740 490 ntBASIC19.34■□□□□ 0.69
TIMP4Q99727 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.34■□□□□ 0.69
TIMP4Q99727 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TIMP4Q99727 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
TIMP4Q99727 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.34■□□□□ 0.69
TIMP4Q99727 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TIMP4Q99727 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TIMP4Q99727 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.34■□□□□ 0.69
TIMP4Q99727 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.34■□□□□ 0.69
TIMP4Q99727 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
TIMP4Q99727 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
TIMP4Q99727 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.33■□□□□ 0.69
TIMP4Q99727 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TIMP4Q99727 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.33■□□□□ 0.69
TIMP4Q99727 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TIMP4Q99727 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.33■□□□□ 0.68
TIMP4Q99727 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TIMP4Q99727 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TIMP4Q99727 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.33■□□□□ 0.68
TIMP4Q99727 AC016769.1-201ENST00000409132 1010 ntBASIC19.33■□□□□ 0.68
TIMP4Q99727 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.33■□□□□ 0.68
TIMP4Q99727 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.33■□□□□ 0.68
TIMP4Q99727 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.33■□□□□ 0.68
TIMP4Q99727 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.33■□□□□ 0.68
TIMP4Q99727 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.33■□□□□ 0.68
TIMP4Q99727 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.33■□□□□ 0.68
TIMP4Q99727 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TIMP4Q99727 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.33■□□□□ 0.68
TIMP4Q99727 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TIMP4Q99727 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
TIMP4Q99727 AC055733.4-201ENST00000638462 1354 ntBASIC19.32■□□□□ 0.68
TIMP4Q99727 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.32■□□□□ 0.68
TIMP4Q99727 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.32■□□□□ 0.68
TIMP4Q99727 SLC25A24-204ENST00000569674 2357 ntBASIC19.32■□□□□ 0.68
TIMP4Q99727 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TIMP4Q99727 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TIMP4Q99727 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TIMP4Q99727 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.32■□□□□ 0.68
TIMP4Q99727 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TIMP4Q99727 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.32■□□□□ 0.68
TIMP4Q99727 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.32■□□□□ 0.68
TIMP4Q99727 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TIMP4Q99727 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TIMP4Q99727 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
TIMP4Q99727 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TIMP4Q99727 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TIMP4Q99727 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
TIMP4Q99727 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.31■□□□□ 0.68
TIMP4Q99727 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.31■□□□□ 0.68
TIMP4Q99727 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.31■□□□□ 0.68
TIMP4Q99727 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.31■□□□□ 0.68
TIMP4Q99727 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.31■□□□□ 0.68
TIMP4Q99727 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TIMP4Q99727 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TIMP4Q99727 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 KRT87P-202ENST00000534226 1464 ntBASIC19.3■□□□□ 0.68
TIMP4Q99727 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.3■□□□□ 0.68
TIMP4Q99727 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.3■□□□□ 0.68
TIMP4Q99727 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TIMP4Q99727 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.3■□□□□ 0.68
TIMP4Q99727 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.3■□□□□ 0.68
TIMP4Q99727 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.3■□□□□ 0.68
TIMP4Q99727 AL034346.1-201ENST00000568244 1277 ntBASIC19.3■□□□□ 0.68
TIMP4Q99727 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TIMP4Q99727 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.3■□□□□ 0.68
TIMP4Q99727 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TIMP4Q99727 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TIMP4Q99727 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TIMP4Q99727 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms