Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS35Q96QK1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VPS35Q96QK1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS35Q96QK1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS35Q96QK1 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS35Q96QK1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS35Q96QK1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS35Q96QK1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS35Q96QK1 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 AC008175.2-201ENST00000612840 297 ntBASIC20.91■□□□□ 0.94
VPS35Q96QK1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS35Q96QK1 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
VPS35Q96QK1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
VPS35Q96QK1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 POU5F1P4-201ENST00000413175 1085 ntBASIC20.9■□□□□ 0.94
VPS35Q96QK1 AC137761.2-201ENST00000561729 223 ntBASIC20.9■□□□□ 0.94
VPS35Q96QK1 AC145350.3-201ENST00000569033 163 ntBASIC20.9■□□□□ 0.94
VPS35Q96QK1 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS35Q96QK1 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS35Q96QK1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
VPS35Q96QK1 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
VPS35Q96QK1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS35Q96QK1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS35Q96QK1 AC006015.1-201ENST00000429970 570 ntBASIC20.89■□□□□ 0.93
VPS35Q96QK1 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS35Q96QK1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.89■□□□□ 0.93
VPS35Q96QK1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.89■□□□□ 0.93
VPS35Q96QK1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.89■□□□□ 0.93
VPS35Q96QK1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS35Q96QK1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS35Q96QK1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS35Q96QK1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS35Q96QK1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS35Q96QK1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 AC244015.2-201ENST00000616358 1861 ntBASIC20.88■□□□□ 0.93
VPS35Q96QK1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS35Q96QK1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS35Q96QK1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 KRT18P11-201ENST00000435214 1283 ntBASIC20.88■□□□□ 0.93
VPS35Q96QK1 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS35Q96QK1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
VPS35Q96QK1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS35Q96QK1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS35Q96QK1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS35Q96QK1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS35Q96QK1 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms