Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 AC092865.7-201ENST00000641832 219 ntBASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC25.27■■□□□ 1.64
SMC1BQ8NDV3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 POM121L13P-201ENST00000422362 380 ntBASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SMC1BQ8NDV3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SMC1BQ8NDV3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 AC113410.3-201ENST00000623366 203 ntBASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SMC1BQ8NDV3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SMC1BQ8NDV3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SMC1BQ8NDV3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SMC1BQ8NDV3 SLC29A4P2-201ENST00000504749 1089 ntBASIC25.23■■□□□ 1.63
SMC1BQ8NDV3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.23■■□□□ 1.63
SMC1BQ8NDV3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC25.23■■□□□ 1.63
SMC1BQ8NDV3 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.23■■□□□ 1.63
SMC1BQ8NDV3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 KRT16P2-201ENST00000414673 1423 ntBASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SMC1BQ8NDV3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.21■■□□□ 1.63
SMC1BQ8NDV3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.63
SMC1BQ8NDV3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 CRAT-202ENST00000393384 973 ntTSL 2 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 AL353708.3-201ENST00000610272 989 ntBASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 AL589743.5-201ENST00000616611 1050 ntBASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SMC1BQ8NDV3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms