Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC88AQ3V6T2 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 OR7E47P-201ENST00000546390 1422 ntBASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 RBM17P2-201ENST00000616397 1405 ntBASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC88AQ3V6T2 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 AL355472.2-201ENST00000422958 438 ntBASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.03■■□□□ 1.76
CCDC88AQ3V6T2 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 AC087742.1-201ENST00000575880 1738 ntBASIC26.02■■□□□ 1.76
CCDC88AQ3V6T2 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 RPPH1-201ENST00000516869 333 ntBASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC88AQ3V6T2 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC26■■□□□ 1.75
CCDC88AQ3V6T2 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 AC053503.5-201ENST00000601508 636 ntBASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 KRT17P1-201ENST00000399211 1546 ntBASIC25.99■■□□□ 1.75
CCDC88AQ3V6T2 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC88AQ3V6T2 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC25.97■■□□□ 1.75
CCDC88AQ3V6T2 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC25.97■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms