Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HIST1H1AQ02539 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 AC131212.1-201ENST00000613771 668 ntBASIC16.05■□□□□ 0.16
HIST1H1AQ02539 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 SF1-220ENST00000626028 704 ntTSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 RARG-204ENST00000543726 1779 ntTSL 2 BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HIST1H1AQ02539 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 SLC47A1P1-202ENST00000449666 945 ntBASIC16.04■□□□□ 0.16
HIST1H1AQ02539 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 OXCT2P1-201ENST00000447263 1535 ntBASIC16.04■□□□□ 0.16
HIST1H1AQ02539 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HIST1H1AQ02539 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 AC005229.4-201ENST00000610085 2198 ntBASIC16.03■□□□□ 0.16
HIST1H1AQ02539 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.03■□□□□ 0.16
HIST1H1AQ02539 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 Z98882.1-201ENST00000622160 2253 ntBASIC16.02■□□□□ 0.16
HIST1H1AQ02539 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 PTMA-205ENST00000410064 814 ntTSL 2 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HIST1H1AQ02539 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.02■□□□□ 0.15
HIST1H1AQ02539 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HIST1H1AQ02539 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
HIST1H1AQ02539 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HIST1H1AQ02539 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HIST1H1AQ02539 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HIST1H1AQ02539 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HIST1H1AQ02539 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
HIST1H1AQ02539 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HIST1H1AQ02539 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HIST1H1AQ02539 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.01■□□□□ 0.15
HIST1H1AQ02539 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HIST1H1AQ02539 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HIST1H1AQ02539 AC104564.3-201ENST00000582367 638 ntBASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms