Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
COL7A1Q02388 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL7A1Q02388 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
COL7A1Q02388 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL7A1Q02388 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.29■□□□□ 0.04
COL7A1Q02388 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL7A1Q02388 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL7A1Q02388 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL7A1Q02388 SLC29A4P2-201ENST00000504749 1089 ntBASIC15.29■□□□□ 0.04
COL7A1Q02388 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL7A1Q02388 RN7SL471P-201ENST00000580476 299 ntBASIC15.29■□□□□ 0.04
COL7A1Q02388 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
COL7A1Q02388 SPIB-206ENST00000596074 847 ntTSL 2 BASIC15.29■□□□□ 0.04
COL7A1Q02388 CYP2T3P-201ENST00000601990 817 ntBASIC15.29■□□□□ 0.04
COL7A1Q02388 AC069544.1-201ENST00000609399 999 ntBASIC15.29■□□□□ 0.04
COL7A1Q02388 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL7A1Q02388 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.29■□□□□ 0.04
COL7A1Q02388 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC15.29■□□□□ 0.04
COL7A1Q02388 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC15.29■□□□□ 0.04
COL7A1Q02388 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.29■□□□□ 0.04
COL7A1Q02388 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL7A1Q02388 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL7A1Q02388 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC15.28■□□□□ 0.04
COL7A1Q02388 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL7A1Q02388 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.28■□□□□ 0.04
COL7A1Q02388 AL049637.2-201ENST00000641778 930 ntBASIC15.28■□□□□ 0.04
COL7A1Q02388 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC15.28■□□□□ 0.04
COL7A1Q02388 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC15.28■□□□□ 0.04
COL7A1Q02388 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC15.28■□□□□ 0.04
COL7A1Q02388 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL7A1Q02388 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL7A1Q02388 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.28■□□□□ 0.04
COL7A1Q02388 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.28■□□□□ 0.04
COL7A1Q02388 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL7A1Q02388 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.27■□□□□ 0.04
COL7A1Q02388 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.27■□□□□ 0.04
COL7A1Q02388 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC15.27■□□□□ 0.04
COL7A1Q02388 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
COL7A1Q02388 AC020928.2-201ENST00000588717 2197 ntBASIC15.27■□□□□ 0.04
COL7A1Q02388 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC15.27■□□□□ 0.04
COL7A1Q02388 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL7A1Q02388 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL7A1Q02388 SERPINH1P1-201ENST00000419794 1249 ntBASIC15.27■□□□□ 0.03
COL7A1Q02388 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.27■□□□□ 0.03
COL7A1Q02388 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC15.27■□□□□ 0.03
COL7A1Q02388 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
COL7A1Q02388 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.27■□□□□ 0.03
COL7A1Q02388 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL7A1Q02388 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL7A1Q02388 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL7A1Q02388 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL7A1Q02388 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC15.27■□□□□ 0.03
COL7A1Q02388 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC15.27■□□□□ 0.03
COL7A1Q02388 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.27■□□□□ 0.03
COL7A1Q02388 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL7A1Q02388 LINC01124-201ENST00000409786 2117 ntBASIC15.26■□□□□ 0.03
COL7A1Q02388 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.26■□□□□ 0.03
COL7A1Q02388 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.26■□□□□ 0.03
COL7A1Q02388 KRT18P35-201ENST00000510488 1269 ntBASIC15.26■□□□□ 0.03
COL7A1Q02388 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC15.26■□□□□ 0.03
COL7A1Q02388 AC092865.7-201ENST00000641832 219 ntBASIC15.26■□□□□ 0.03
COL7A1Q02388 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL7A1Q02388 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
COL7A1Q02388 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC15.26■□□□□ 0.03
COL7A1Q02388 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC15.26■□□□□ 0.03
COL7A1Q02388 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC15.26■□□□□ 0.03
COL7A1Q02388 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC15.26■□□□□ 0.03
COL7A1Q02388 TK2-213ENST00000563369 882 ntTSL 5 BASIC15.26■□□□□ 0.03
COL7A1Q02388 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL7A1Q02388 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL7A1Q02388 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL7A1Q02388 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL7A1Q02388 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC15.25■□□□□ 0.03
COL7A1Q02388 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.25■□□□□ 0.03
COL7A1Q02388 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.25■□□□□ 0.03
COL7A1Q02388 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
COL7A1Q02388 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC15.25■□□□□ 0.03
COL7A1Q02388 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.25■□□□□ 0.03
COL7A1Q02388 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC15.25■□□□□ 0.03
COL7A1Q02388 AC233702.5-201ENST00000584107 538 ntBASIC15.25■□□□□ 0.03
COL7A1Q02388 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
COL7A1Q02388 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.25■□□□□ 0.03
COL7A1Q02388 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL7A1Q02388 TSPY15P-201ENST00000457163 923 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms