Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
FOXA3P55318 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
FOXA3P55318 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA3P55318 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
FOXA3P55318 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
FOXA3P55318 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 AC139795.1-202ENST00000500444 432 ntBASIC15.78■□□□□ 0.12
FOXA3P55318 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 DUX4L18-201ENST00000553347 1267 ntBASIC15.78■□□□□ 0.12
FOXA3P55318 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC15.78■□□□□ 0.12
FOXA3P55318 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
FOXA3P55318 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA3P55318 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXA3P55318 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXA3P55318 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
FOXA3P55318 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXA3P55318 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXA3P55318 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 KRT18P60-201ENST00000312876 1297 ntBASIC15.77■□□□□ 0.12
FOXA3P55318 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC15.77■□□□□ 0.12
FOXA3P55318 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
FOXA3P55318 AC079089.2-201ENST00000531211 1277 ntBASIC15.77■□□□□ 0.12
FOXA3P55318 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
FOXA3P55318 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA3P55318 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA3P55318 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA3P55318 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC15.77■□□□□ 0.11
FOXA3P55318 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA3P55318 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA3P55318 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC15.77■□□□□ 0.11
FOXA3P55318 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
FOXA3P55318 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
FOXA3P55318 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXA3P55318 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
FOXA3P55318 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXA3P55318 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC15.76■□□□□ 0.11
FOXA3P55318 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC15.76■□□□□ 0.11
FOXA3P55318 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
FOXA3P55318 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
FOXA3P55318 ME2-216ENST00000639850 2331 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 USP45-205ENST00000472914 1617 ntTSL 5 BASIC15.76■□□□□ 0.11
FOXA3P55318 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC15.75■□□□□ 0.11
FOXA3P55318 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
FOXA3P55318 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.75■□□□□ 0.11
FOXA3P55318 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC15.75■□□□□ 0.11
FOXA3P55318 MIR6722-201ENST00000617286 78 ntBASIC15.75■□□□□ 0.11
FOXA3P55318 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC15.75■□□□□ 0.11
FOXA3P55318 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC15.75■□□□□ 0.11
FOXA3P55318 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
FOXA3P55318 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.75■□□□□ 0.11
FOXA3P55318 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
FOXA3P55318 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
FOXA3P55318 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA3P55318 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC15.74■□□□□ 0.11
FOXA3P55318 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.74■□□□□ 0.11
FOXA3P55318 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms