Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.07■□□□□ 0.32
CDX1P47902 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CDX1P47902 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.07■□□□□ 0.32
CDX1P47902 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDX1P47902 MIR572-201ENST00000384983 95 ntBASIC17.07■□□□□ 0.32
CDX1P47902 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC17.07■□□□□ 0.32
CDX1P47902 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.07■□□□□ 0.32
CDX1P47902 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CDX1P47902 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CDX1P47902 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDX1P47902 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CDX1P47902 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CDX1P47902 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX1P47902 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.06■□□□□ 0.32
CDX1P47902 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.06■□□□□ 0.32
CDX1P47902 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.06■□□□□ 0.32
CDX1P47902 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX1P47902 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.06■□□□□ 0.32
CDX1P47902 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDX1P47902 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.06■□□□□ 0.32
CDX1P47902 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDX1P47902 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX1P47902 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX1P47902 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDX1P47902 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.06■□□□□ 0.32
CDX1P47902 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.06■□□□□ 0.32
CDX1P47902 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CDX1P47902 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.05■□□□□ 0.32
CDX1P47902 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.05■□□□□ 0.32
CDX1P47902 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.05■□□□□ 0.32
CDX1P47902 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
CDX1P47902 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.05■□□□□ 0.32
CDX1P47902 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDX1P47902 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC17.05■□□□□ 0.32
CDX1P47902 AC026271.2-201ENST00000428091 497 ntBASIC17.05■□□□□ 0.32
CDX1P47902 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.05■□□□□ 0.32
CDX1P47902 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.05■□□□□ 0.32
CDX1P47902 AL358852.1-201ENST00000623174 1268 ntBASIC17.05■□□□□ 0.32
CDX1P47902 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDX1P47902 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CDX1P47902 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX1P47902 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX1P47902 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDX1P47902 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CDX1P47902 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
CDX1P47902 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CDX1P47902 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX1P47902 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.04■□□□□ 0.32
CDX1P47902 AC097381.1-201ENST00000429019 1296 ntBASIC17.04■□□□□ 0.32
CDX1P47902 MIR6821-201ENST00000617625 74 ntBASIC17.04■□□□□ 0.32
CDX1P47902 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX1P47902 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX1P47902 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.04■□□□□ 0.32
CDX1P47902 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CDX1P47902 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX1P47902 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDX1P47902 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.04■□□□□ 0.32
CDX1P47902 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX1P47902 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.03■□□□□ 0.32
CDX1P47902 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.03■□□□□ 0.32
CDX1P47902 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX1P47902 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX1P47902 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX1P47902 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
CDX1P47902 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX1P47902 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.03■□□□□ 0.32
CDX1P47902 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.03■□□□□ 0.32
CDX1P47902 AC087239.1-201ENST00000622671 572 ntBASIC17.03■□□□□ 0.32
CDX1P47902 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDX1P47902 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC17.03■□□□□ 0.32
CDX1P47902 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms