Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CHRNA1P02708 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CHRNA1P02708 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.09■■□□□ 1.29
CHRNA1P02708 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.09■■□□□ 1.29
CHRNA1P02708 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
CHRNA1P02708 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.08■■□□□ 1.29
CHRNA1P02708 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.08■■□□□ 1.29
CHRNA1P02708 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 ITM2C-210ENST00000620962 501 ntBASIC23.08■■□□□ 1.29
CHRNA1P02708 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.08■■□□□ 1.29
CHRNA1P02708 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.08■■□□□ 1.29
CHRNA1P02708 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
CHRNA1P02708 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
CHRNA1P02708 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.08■■□□□ 1.28
CHRNA1P02708 C1orf229-201ENST00000623686 2258 ntBASIC23.07■■□□□ 1.28
CHRNA1P02708 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHRNA1P02708 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CHRNA1P02708 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.07■■□□□ 1.28
CHRNA1P02708 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CHRNA1P02708 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHRNA1P02708 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHRNA1P02708 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHRNA1P02708 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CHRNA1P02708 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CHRNA1P02708 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CHRNA1P02708 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.07■■□□□ 1.28
CHRNA1P02708 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.07■■□□□ 1.28
CHRNA1P02708 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CHRNA1P02708 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.07■■□□□ 1.28
CHRNA1P02708 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.07■■□□□ 1.28
CHRNA1P02708 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.07■■□□□ 1.28
CHRNA1P02708 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHRNA1P02708 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.06■■□□□ 1.28
CHRNA1P02708 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHRNA1P02708 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHRNA1P02708 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CHRNA1P02708 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.06■■□□□ 1.28
CHRNA1P02708 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.06■■□□□ 1.28
CHRNA1P02708 AC097658.1-201ENST00000475555 843 ntBASIC23.06■■□□□ 1.28
CHRNA1P02708 AC091874.3-201ENST00000512672 1195 ntBASIC23.06■■□□□ 1.28
CHRNA1P02708 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.06■■□□□ 1.28
CHRNA1P02708 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.06■■□□□ 1.28
CHRNA1P02708 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.06■■□□□ 1.28
CHRNA1P02708 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.06■■□□□ 1.28
CHRNA1P02708 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CHRNA1P02708 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CHRNA1P02708 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CHRNA1P02708 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CHRNA1P02708 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CHRNA1P02708 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHRNA1P02708 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHRNA1P02708 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.05■■□□□ 1.28
CHRNA1P02708 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.05■■□□□ 1.28
CHRNA1P02708 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.05■■□□□ 1.28
CHRNA1P02708 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CHRNA1P02708 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CHRNA1P02708 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CHRNA1P02708 PRORSD1P-201ENST00000295112 541 ntBASIC23.04■■□□□ 1.28
CHRNA1P02708 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CHRNA1P02708 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.04■■□□□ 1.28
CHRNA1P02708 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.04■■□□□ 1.28
CHRNA1P02708 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.04■■□□□ 1.28
CHRNA1P02708 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.04■■□□□ 1.28
CHRNA1P02708 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CHRNA1P02708 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.04■■□□□ 1.28
CHRNA1P02708 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CHRNA1P02708 C9orf163-202ENST00000624034 2573 ntBASIC23.03■■□□□ 1.28
CHRNA1P02708 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.03■■□□□ 1.28
CHRNA1P02708 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHRNA1P02708 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CHRNA1P02708 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CHRNA1P02708 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
CHRNA1P02708 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHRNA1P02708 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CHRNA1P02708 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHRNA1P02708 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHRNA1P02708 KRT18P29-201ENST00000397031 1267 ntBASIC23.03■■□□□ 1.28
CHRNA1P02708 DUSP5P2-201ENST00000426873 1033 ntBASIC23.03■■□□□ 1.28
CHRNA1P02708 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.03■■□□□ 1.28
CHRNA1P02708 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
CHRNA1P02708 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.03■■□□□ 1.28
CHRNA1P02708 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHRNA1P02708 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CHRNA1P02708 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.03■■□□□ 1.28
CHRNA1P02708 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
CHRNA1P02708 AC127496.7-201ENST00000625110 1798 ntBASIC23.02■■□□□ 1.28
CHRNA1P02708 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms