Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 AP004607.7-201ENST00000527152 1677 ntBASIC17.06■□□□□ 0.32
FOXA2Q9Y261 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA2Q9Y261 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA2Q9Y261 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA2Q9Y261 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 AC003102.1-202ENST00000563394 1796 ntBASIC17.03■□□□□ 0.32
FOXA2Q9Y261 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.03■□□□□ 0.32
FOXA2Q9Y261 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms