Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 C11orf96-202ENST00000528572 1834 ntBASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 AC137761.2-201ENST00000561729 223 ntBASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 AC145350.3-201ENST00000569033 163 ntBASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 AP001160.3-201ENST00000601484 763 ntBASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM39Q9HCM9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 IKBKGP1-201ENST00000612193 1073 ntBASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM39Q9HCM9 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM39Q9HCM9 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 AC016769.1-201ENST00000409132 1010 ntBASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 AC006015.1-201ENST00000429970 570 ntBASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 AC010141.2-201ENST00000452426 721 ntBASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 AC092437.1-201ENST00000624794 1048 ntBASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM39Q9HCM9 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 AL137784.2-201ENST00000607332 1000 ntBASIC20.91■□□□□ 0.94
TRIM39Q9HCM9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 KRT18P20-201ENST00000548986 1279 ntBASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM39Q9HCM9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms