Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PAAF1Q9BRP4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.7■■□□□ 1.22
PAAF1Q9BRP4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PAAF1Q9BRP4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PAAF1Q9BRP4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.69■■□□□ 1.22
PAAF1Q9BRP4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.69■■□□□ 1.22
PAAF1Q9BRP4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.69■■□□□ 1.22
PAAF1Q9BRP4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 AF201337.1-201ENST00000520239 748 ntBASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 AC105036.2-201ENST00000569468 176 ntBASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.68■■□□□ 1.22
PAAF1Q9BRP4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 FAM99A-202ENST00000538190 1989 ntBASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 CYP2T1P-201ENST00000432607 1285 ntBASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 AC133552.2-202ENST00000575694 574 ntBASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PAAF1Q9BRP4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 POU5F1P4-201ENST00000413175 1085 ntBASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 AC098934.4-201ENST00000564127 592 ntBASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PAAF1Q9BRP4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 AC007322.4-201ENST00000509611 723 ntBASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.65■■□□□ 1.22
PAAF1Q9BRP4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PAAF1Q9BRP4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 AC120498.10-201ENST00000621827 505 ntBASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.64■■□□□ 1.21
PAAF1Q9BRP4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 SLC29A4P1-201ENST00000398760 971 ntBASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 KRT16P2-201ENST00000414673 1423 ntBASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 RBM17P2-201ENST00000616397 1405 ntBASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.63■■□□□ 1.21
PAAF1Q9BRP4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 AC093787.1-201ENST00000450396 207 ntBASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.62■■□□□ 1.21
PAAF1Q9BRP4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms