Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTHRC1Q96CG8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.69■□□□□ 0.74
CTHRC1Q96CG8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 AC087623.3-201ENST00000607047 1098 ntBASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTHRC1Q96CG8 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 AP004607.4-201ENST00000530158 1459 ntBASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 AC034268.1-201ENST00000441047 882 ntBASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 AC138907.5-202ENST00000569484 235 ntBASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CTHRC1Q96CG8 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 AC007375.3-201ENST00000600936 2314 ntBASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.66■□□□□ 0.74
CTHRC1Q96CG8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 MIR5787-201ENST00000611784 55 ntBASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.65■□□□□ 0.74
CTHRC1Q96CG8 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CTHRC1Q96CG8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.64■□□□□ 0.74
CTHRC1Q96CG8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CTHRC1Q96CG8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 KRT18P61-201ENST00000585825 1298 ntBASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 AC004854.2-201ENST00000608450 1441 ntBASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.64■□□□□ 0.73
CTHRC1Q96CG8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 CLDN5-201ENST00000403084 2357 ntBASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CTHRC1Q96CG8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms