Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 AC026471.6-201ENST00000622954 1905 ntBASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 DET1-205ENST00000558413 583 ntTSL 4 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
USHBP1Q8N6Y0 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 PRORSD1P-201ENST00000295112 541 ntBASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 RARRES2P4-201ENST00000514074 484 ntBASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 C9orf163-202ENST00000624034 2573 ntBASIC28.05■■■□□ 2.08
USHBP1Q8N6Y0 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 MYC-209ENST00000641252 345 ntBASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
USHBP1Q8N6Y0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 KRT16P2-201ENST00000414673 1423 ntBASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 BET1L-207ENST00000529614 560 ntTSL 5 BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 ITM2C-210ENST00000620962 501 ntBASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
USHBP1Q8N6Y0 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 AC010980.2-201ENST00000587099 1412 ntBASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC28.02■■■□□ 2.08
USHBP1Q8N6Y0 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 AC080038.3-201ENST00000623346 1952 ntBASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 KRT18P29-201ENST00000397031 1267 ntBASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 AC093827.2-201ENST00000512654 315 ntBASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
USHBP1Q8N6Y0 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 RHEB-204ENST00000472642 900 ntTSL 3 BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 AL591742.1-201ENST00000604433 565 ntBASIC28■■■□□ 2.07
USHBP1Q8N6Y0 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC28■■■□□ 2.07
USHBP1Q8N6Y0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 ISCU-212ENST00000547005 795 ntTSL 3 BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
USHBP1Q8N6Y0 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 C1orf229-201ENST00000623686 2258 ntBASIC27.98■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms