Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 OXCT2P1-201ENST00000447263 1535 ntBASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
DEPDC4Q8N2C3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 AC142381.2-201ENST00000566120 298 ntBASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 AC099791.2-201ENST00000605725 427 ntBASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DEPDC4Q8N2C3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
DEPDC4Q8N2C3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 C17orf82-201ENST00000623772 1530 ntBASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 EDA-201ENST00000338901 1233 ntBASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 AC024257.2-201ENST00000549699 147 ntBASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
DEPDC4Q8N2C3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 AL138724.1-201ENST00000606771 1088 ntBASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 AL355001.2-201ENST00000620617 1191 ntBASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DEPDC4Q8N2C3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms