Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
USP54Q70EL1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC28.52■■■□□ 2.16
USP54Q70EL1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
USP54Q70EL1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.16
USP54Q70EL1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
USP54Q70EL1 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.16
USP54Q70EL1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.16
USP54Q70EL1 AC093827.2-201ENST00000512654 315 ntBASIC28.51■■■□□ 2.16
USP54Q70EL1 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.16
USP54Q70EL1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC28.51■■■□□ 2.16
USP54Q70EL1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC28.51■■■□□ 2.15
USP54Q70EL1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
USP54Q70EL1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
USP54Q70EL1 PRORSD1P-201ENST00000295112 541 ntBASIC28.51■■■□□ 2.15
USP54Q70EL1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
USP54Q70EL1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC28.51■■■□□ 2.15
USP54Q70EL1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC28.51■■■□□ 2.15
USP54Q70EL1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
USP54Q70EL1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
USP54Q70EL1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
USP54Q70EL1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
USP54Q70EL1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC28.5■■■□□ 2.15
USP54Q70EL1 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
USP54Q70EL1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC28.5■■■□□ 2.15
USP54Q70EL1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
USP54Q70EL1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC28.5■■■□□ 2.15
USP54Q70EL1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC28.5■■■□□ 2.15
USP54Q70EL1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC28.49■■■□□ 2.15
USP54Q70EL1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC28.49■■■□□ 2.15
USP54Q70EL1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
USP54Q70EL1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC28.49■■■□□ 2.15
USP54Q70EL1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC28.49■■■□□ 2.15
USP54Q70EL1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP54Q70EL1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
USP54Q70EL1 FAM201B-201ENST00000458407 597 ntBASIC28.48■■■□□ 2.15
USP54Q70EL1 RPS2P52-201ENST00000469610 820 ntBASIC28.48■■■□□ 2.15
USP54Q70EL1 AL591742.1-201ENST00000604433 565 ntBASIC28.48■■■□□ 2.15
USP54Q70EL1 AC008694.1-202ENST00000636953 945 ntBASIC28.48■■■□□ 2.15
USP54Q70EL1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP54Q70EL1 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC28.48■■■□□ 2.15
USP54Q70EL1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
USP54Q70EL1 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
USP54Q70EL1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP54Q70EL1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USP54Q70EL1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC28.48■■■□□ 2.15
USP54Q70EL1 FAM21FP-204ENST00000608637 956 ntBASIC28.48■■■□□ 2.15
USP54Q70EL1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USP54Q70EL1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC28.47■■■□□ 2.15
USP54Q70EL1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP54Q70EL1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
USP54Q70EL1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC28.47■■■□□ 2.15
USP54Q70EL1 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
USP54Q70EL1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP54Q70EL1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC28.47■■■□□ 2.15
USP54Q70EL1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC28.47■■■□□ 2.15
USP54Q70EL1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
USP54Q70EL1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC28.47■■■□□ 2.15
USP54Q70EL1 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP54Q70EL1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP54Q70EL1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC28.46■■■□□ 2.15
USP54Q70EL1 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC28.46■■■□□ 2.15
USP54Q70EL1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC28.46■■■□□ 2.15
USP54Q70EL1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
USP54Q70EL1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
USP54Q70EL1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP54Q70EL1 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.15
USP54Q70EL1 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC28.45■■■□□ 2.15
USP54Q70EL1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
USP54Q70EL1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
USP54Q70EL1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.15
USP54Q70EL1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC28.45■■■□□ 2.15
USP54Q70EL1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC28.45■■■□□ 2.15
USP54Q70EL1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
USP54Q70EL1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC28.45■■■□□ 2.15
USP54Q70EL1 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC28.45■■■□□ 2.15
USP54Q70EL1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC28.45■■■□□ 2.15
USP54Q70EL1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
USP54Q70EL1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
USP54Q70EL1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC28.45■■■□□ 2.14
USP54Q70EL1 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
USP54Q70EL1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
USP54Q70EL1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
USP54Q70EL1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
USP54Q70EL1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC28.45■■■□□ 2.14
USP54Q70EL1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC28.45■■■□□ 2.14
USP54Q70EL1 UNC93B5-201ENST00000530315 699 ntBASIC28.45■■■□□ 2.14
USP54Q70EL1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
USP54Q70EL1 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC28.44■■■□□ 2.14
USP54Q70EL1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP54Q70EL1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP54Q70EL1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC28.44■■■□□ 2.14
USP54Q70EL1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC28.44■■■□□ 2.14
USP54Q70EL1 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC28.44■■■□□ 2.14
USP54Q70EL1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
USP54Q70EL1 KRT17P1-201ENST00000399211 1546 ntBASIC28.43■■■□□ 2.14
USP54Q70EL1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.43■■■□□ 2.14
USP54Q70EL1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
USP54Q70EL1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC28.43■■■□□ 2.14
USP54Q70EL1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP54Q70EL1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC28.43■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms