Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 YBX1P1-201ENST00000445822 960 ntBASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.27■□□□□ 0.83
TRIM40Q6P9F5 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.27■□□□□ 0.83
TRIM40Q6P9F5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 AC123595.1-201ENST00000440769 1046 ntBASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM40Q6P9F5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM40Q6P9F5 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TRIM40Q6P9F5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM40Q6P9F5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM40Q6P9F5 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms