Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC15.34■□□□□ 0.05
COL7A1Q02388 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC15.33■□□□□ 0.05
COL7A1Q02388 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC15.33■□□□□ 0.05
COL7A1Q02388 PNMA6B-201ENST00000538162 1200 ntBASIC15.33■□□□□ 0.05
COL7A1Q02388 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL7A1Q02388 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC15.33■□□□□ 0.05
COL7A1Q02388 SOX15-203ENST00000570788 1093 ntBASIC15.33■□□□□ 0.05
COL7A1Q02388 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.05
COL7A1Q02388 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL7A1Q02388 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
COL7A1Q02388 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC15.33■□□□□ 0.05
COL7A1Q02388 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
COL7A1Q02388 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC15.33■□□□□ 0.04
COL7A1Q02388 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.33■□□□□ 0.04
COL7A1Q02388 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
COL7A1Q02388 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
COL7A1Q02388 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC15.33■□□□□ 0.04
COL7A1Q02388 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 OR2A1-AS1-201ENST00000462305 773 ntBASIC15.33■□□□□ 0.04
COL7A1Q02388 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC15.33■□□□□ 0.04
COL7A1Q02388 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC15.33■□□□□ 0.04
COL7A1Q02388 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 KLF2-202ENST00000592003 564 ntTSL 3 BASIC15.33■□□□□ 0.04
COL7A1Q02388 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC15.33■□□□□ 0.04
COL7A1Q02388 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL7A1Q02388 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL7A1Q02388 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC15.32■□□□□ 0.04
COL7A1Q02388 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.32■□□□□ 0.04
COL7A1Q02388 C2orf69P4-201ENST00000565394 541 ntBASIC15.32■□□□□ 0.04
COL7A1Q02388 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.32■□□□□ 0.04
COL7A1Q02388 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC15.32■□□□□ 0.04
COL7A1Q02388 FGF8-207ENST00000618991 856 ntTSL 3 BASIC15.32■□□□□ 0.04
COL7A1Q02388 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC15.32■□□□□ 0.04
COL7A1Q02388 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
COL7A1Q02388 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC15.32■□□□□ 0.04
COL7A1Q02388 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.32■□□□□ 0.04
COL7A1Q02388 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC15.32■□□□□ 0.04
COL7A1Q02388 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL7A1Q02388 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.32■□□□□ 0.04
COL7A1Q02388 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL7A1Q02388 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL7A1Q02388 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL7A1Q02388 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL7A1Q02388 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL7A1Q02388 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL7A1Q02388 EED-207ENST00000528180 1745 ntTSL 5 BASIC15.31■□□□□ 0.04
COL7A1Q02388 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL7A1Q02388 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL7A1Q02388 RPS2P55-201ENST00000397318 883 ntBASIC15.31■□□□□ 0.04
COL7A1Q02388 AC107956.1-201ENST00000494359 873 ntBASIC15.31■□□□□ 0.04
COL7A1Q02388 AL355075.4-201ENST00000554988 638 ntBASIC15.31■□□□□ 0.04
COL7A1Q02388 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.31■□□□□ 0.04
COL7A1Q02388 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC15.31■□□□□ 0.04
COL7A1Q02388 AC060766.5-201ENST00000590539 871 ntBASIC15.31■□□□□ 0.04
COL7A1Q02388 AL591742.1-201ENST00000604433 565 ntBASIC15.31■□□□□ 0.04
COL7A1Q02388 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC15.31■□□□□ 0.04
COL7A1Q02388 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC15.31■□□□□ 0.04
COL7A1Q02388 AP006587.3-201ENST00000525742 1516 ntBASIC15.31■□□□□ 0.04
COL7A1Q02388 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC15.31■□□□□ 0.04
COL7A1Q02388 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL7A1Q02388 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
COL7A1Q02388 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC15.31■□□□□ 0.04
COL7A1Q02388 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
COL7A1Q02388 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC15.3■□□□□ 0.04
COL7A1Q02388 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL7A1Q02388 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 KRT16P2-201ENST00000414673 1423 ntBASIC15.3■□□□□ 0.04
COL7A1Q02388 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL7A1Q02388 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL7A1Q02388 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC15.3■□□□□ 0.04
COL7A1Q02388 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL7A1Q02388 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 AL355472.2-201ENST00000422958 438 ntBASIC15.3■□□□□ 0.04
COL7A1Q02388 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
COL7A1Q02388 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL7A1Q02388 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL7A1Q02388 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC15.3■□□□□ 0.04
COL7A1Q02388 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL7A1Q02388 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC15.3■□□□□ 0.04
COL7A1Q02388 TMPOP1-202ENST00000424642 1267 ntBASIC15.3■□□□□ 0.04
COL7A1Q02388 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms