Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.93■□□□□ 0.62
H3F3AP84243 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.92■□□□□ 0.62
H3F3AP84243 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.92■□□□□ 0.62
H3F3AP84243 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.92■□□□□ 0.62
H3F3AP84243 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.92■□□□□ 0.62
H3F3AP84243 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.92■□□□□ 0.62
H3F3AP84243 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.92■□□□□ 0.62
H3F3AP84243 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.92■□□□□ 0.62
H3F3AP84243 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.92■□□□□ 0.62
H3F3AP84243 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.92■□□□□ 0.62
H3F3AP84243 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
H3F3AP84243 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
H3F3AP84243 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
H3F3AP84243 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
H3F3AP84243 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
H3F3AP84243 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.91■□□□□ 0.62
H3F3AP84243 MIR935-201ENST00000401179 91 ntBASIC18.91■□□□□ 0.62
H3F3AP84243 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.91■□□□□ 0.62
H3F3AP84243 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.91■□□□□ 0.62
H3F3AP84243 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.91■□□□□ 0.62
H3F3AP84243 KRT18P61-201ENST00000585825 1298 ntBASIC18.91■□□□□ 0.62
H3F3AP84243 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
H3F3AP84243 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
H3F3AP84243 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
H3F3AP84243 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
H3F3AP84243 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
H3F3AP84243 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
H3F3AP84243 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
H3F3AP84243 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.9■□□□□ 0.62
H3F3AP84243 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
H3F3AP84243 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.9■□□□□ 0.62
H3F3AP84243 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.9■□□□□ 0.62
H3F3AP84243 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.9■□□□□ 0.62
H3F3AP84243 MIR5787-201ENST00000611784 55 ntBASIC18.9■□□□□ 0.62
H3F3AP84243 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.9■□□□□ 0.62
H3F3AP84243 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
H3F3AP84243 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.9■□□□□ 0.62
H3F3AP84243 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
H3F3AP84243 AC004854.2-201ENST00000608450 1441 ntBASIC18.9■□□□□ 0.62
H3F3AP84243 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
H3F3AP84243 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
H3F3AP84243 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
H3F3AP84243 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.89■□□□□ 0.61
H3F3AP84243 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
H3F3AP84243 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
H3F3AP84243 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.89■□□□□ 0.61
H3F3AP84243 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
H3F3AP84243 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.89■□□□□ 0.61
H3F3AP84243 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
H3F3AP84243 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.89■□□□□ 0.61
H3F3AP84243 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.89■□□□□ 0.61
H3F3AP84243 AC138907.5-202ENST00000569484 235 ntBASIC18.89■□□□□ 0.61
H3F3AP84243 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.89■□□□□ 0.61
H3F3AP84243 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
H3F3AP84243 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.89■□□□□ 0.61
H3F3AP84243 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
H3F3AP84243 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.89■□□□□ 0.61
H3F3AP84243 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.89■□□□□ 0.61
H3F3AP84243 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.89■□□□□ 0.61
H3F3AP84243 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
H3F3AP84243 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
H3F3AP84243 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.89■□□□□ 0.61
H3F3AP84243 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.88■□□□□ 0.61
H3F3AP84243 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
H3F3AP84243 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
H3F3AP84243 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms