Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.34
MSH6P52701 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC29.64■■■□□ 2.34
MSH6P52701 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.33
MSH6P52701 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC29.64■■■□□ 2.33
MSH6P52701 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
MSH6P52701 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
MSH6P52701 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
MSH6P52701 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH6P52701 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH6P52701 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC29.63■■■□□ 2.33
MSH6P52701 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH6P52701 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
MSH6P52701 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC29.63■■■□□ 2.33
MSH6P52701 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
MSH6P52701 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC29.63■■■□□ 2.33
MSH6P52701 ABHD17AP6-201ENST00000458502 1044 ntBASIC29.63■■■□□ 2.33
MSH6P52701 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC29.63■■■□□ 2.33
MSH6P52701 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC29.63■■■□□ 2.33
MSH6P52701 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC29.63■■■□□ 2.33
MSH6P52701 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC29.62■■■□□ 2.33
MSH6P52701 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC29.62■■■□□ 2.33
MSH6P52701 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC29.62■■■□□ 2.33
MSH6P52701 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC29.62■■■□□ 2.33
MSH6P52701 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC29.62■■■□□ 2.33
MSH6P52701 AC233263.1-201ENST00000578059 224 ntBASIC29.62■■■□□ 2.33
MSH6P52701 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
MSH6P52701 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
MSH6P52701 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
MSH6P52701 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC29.62■■■□□ 2.33
MSH6P52701 OR7E47P-201ENST00000546390 1422 ntBASIC29.61■■■□□ 2.33
MSH6P52701 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
MSH6P52701 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH6P52701 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH6P52701 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
MSH6P52701 PNMA6B-201ENST00000538162 1200 ntBASIC29.61■■■□□ 2.33
MSH6P52701 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC29.61■■■□□ 2.33
MSH6P52701 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC29.61■■■□□ 2.33
MSH6P52701 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC29.6■■■□□ 2.33
MSH6P52701 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC29.6■■■□□ 2.33
MSH6P52701 AL139125.2-201ENST00000623134 1869 ntBASIC29.6■■■□□ 2.33
MSH6P52701 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH6P52701 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC29.6■■■□□ 2.33
MSH6P52701 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
MSH6P52701 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC29.6■■■□□ 2.33
MSH6P52701 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC29.6■■■□□ 2.33
MSH6P52701 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH6P52701 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC29.59■■■□□ 2.33
MSH6P52701 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH6P52701 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC29.59■■■□□ 2.33
MSH6P52701 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC29.59■■■□□ 2.33
MSH6P52701 AC069544.1-201ENST00000609399 999 ntBASIC29.59■■■□□ 2.33
MSH6P52701 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
MSH6P52701 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC29.59■■■□□ 2.33
MSH6P52701 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
MSH6P52701 AC012618.2-201ENST00000428058 849 ntBASIC29.58■■■□□ 2.33
MSH6P52701 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC29.58■■■□□ 2.33
MSH6P52701 RNF146-206ENST00000480444 843 ntTSL 2 BASIC29.58■■■□□ 2.33
MSH6P52701 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC29.58■■■□□ 2.33
MSH6P52701 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC29.58■■■□□ 2.33
MSH6P52701 CD44-222ENST00000526025 1052 ntTSL 2 BASIC29.58■■■□□ 2.33
MSH6P52701 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC29.58■■■□□ 2.33
MSH6P52701 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
MSH6P52701 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
MSH6P52701 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC29.58■■■□□ 2.33
MSH6P52701 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
MSH6P52701 AL355472.2-201ENST00000422958 438 ntBASIC29.57■■■□□ 2.32
MSH6P52701 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC29.57■■■□□ 2.32
MSH6P52701 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
MSH6P52701 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC29.57■■■□□ 2.32
MSH6P52701 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
MSH6P52701 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
MSH6P52701 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
MSH6P52701 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
MSH6P52701 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC29.56■■■□□ 2.32
MSH6P52701 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC29.56■■■□□ 2.32
MSH6P52701 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC29.56■■■□□ 2.32
MSH6P52701 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
MSH6P52701 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
MSH6P52701 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC29.56■■■□□ 2.32
MSH6P52701 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
MSH6P52701 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
MSH6P52701 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC29.56■■■□□ 2.32
MSH6P52701 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
MSH6P52701 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC29.55■■■□□ 2.32
MSH6P52701 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH6P52701 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH6P52701 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH6P52701 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC29.55■■■□□ 2.32
MSH6P52701 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC29.55■■■□□ 2.32
MSH6P52701 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC29.55■■■□□ 2.32
MSH6P52701 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC29.55■■■□□ 2.32
MSH6P52701 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
MSH6P52701 LINC01960-201ENST00000563759 1884 ntBASIC29.55■■■□□ 2.32
MSH6P52701 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
MSH6P52701 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC29.55■■■□□ 2.32
MSH6P52701 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC29.55■■■□□ 2.32
MSH6P52701 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC29.54■■■□□ 2.32
MSH6P52701 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC29.54■■■□□ 2.32
MSH6P52701 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
MSH6P52701 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms