Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.75■■□□□ 1.07
NEK3P51956 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.75■■□□□ 1.07
NEK3P51956 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NEK3P51956 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
NEK3P51956 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.75■■□□□ 1.07
NEK3P51956 AC022517.1-201ENST00000592429 346 ntBASIC21.75■■□□□ 1.07
NEK3P51956 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NEK3P51956 AC244015.2-201ENST00000616358 1861 ntBASIC21.75■■□□□ 1.07
NEK3P51956 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.75■■□□□ 1.07
NEK3P51956 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.74■■□□□ 1.07
NEK3P51956 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.74■■□□□ 1.07
NEK3P51956 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.74■■□□□ 1.07
NEK3P51956 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
NEK3P51956 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
NEK3P51956 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.74■■□□□ 1.07
NEK3P51956 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NEK3P51956 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.74■■□□□ 1.07
NEK3P51956 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.74■■□□□ 1.07
NEK3P51956 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.74■■□□□ 1.07
NEK3P51956 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NEK3P51956 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
NEK3P51956 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.74■■□□□ 1.07
NEK3P51956 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.73■■□□□ 1.07
NEK3P51956 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
NEK3P51956 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
NEK3P51956 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.73■■□□□ 1.07
NEK3P51956 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.73■■□□□ 1.07
NEK3P51956 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.73■■□□□ 1.07
NEK3P51956 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.73■■□□□ 1.07
NEK3P51956 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NEK3P51956 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
NEK3P51956 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
NEK3P51956 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
NEK3P51956 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NEK3P51956 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.71■■□□□ 1.07
NEK3P51956 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
NEK3P51956 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.71■■□□□ 1.07
NEK3P51956 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
NEK3P51956 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NEK3P51956 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
NEK3P51956 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
NEK3P51956 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.7■■□□□ 1.06
NEK3P51956 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.7■■□□□ 1.06
NEK3P51956 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
NEK3P51956 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.7■■□□□ 1.06
NEK3P51956 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
NEK3P51956 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.7■■□□□ 1.06
NEK3P51956 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
NEK3P51956 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.7■■□□□ 1.06
NEK3P51956 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.7■■□□□ 1.06
NEK3P51956 AC009237.3-201ENST00000393279 1427 ntBASIC21.7■■□□□ 1.06
NEK3P51956 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
NEK3P51956 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.7■■□□□ 1.06
NEK3P51956 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
NEK3P51956 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
NEK3P51956 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NEK3P51956 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.69■■□□□ 1.06
NEK3P51956 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.69■■□□□ 1.06
NEK3P51956 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.69■■□□□ 1.06
NEK3P51956 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.69■■□□□ 1.06
NEK3P51956 IKBKGP1-201ENST00000612193 1073 ntBASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms