Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.24■□□□□ 0.99
CCNFP41002 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.24■□□□□ 0.99
CCNFP41002 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.24■□□□□ 0.99
CCNFP41002 AC142381.2-201ENST00000566120 298 ntBASIC21.24■□□□□ 0.99
CCNFP41002 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.24■□□□□ 0.99
CCNFP41002 AL136967.2-201ENST00000623968 743 ntBASIC21.24■□□□□ 0.99
CCNFP41002 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.24■□□□□ 0.99
CCNFP41002 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.24■□□□□ 0.99
CCNFP41002 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.24■□□□□ 0.99
CCNFP41002 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCNFP41002 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNFP41002 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CCNFP41002 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNFP41002 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.23■□□□□ 0.99
CCNFP41002 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.23■□□□□ 0.99
CCNFP41002 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CCNFP41002 AC092667.1-201ENST00000434301 2586 ntBASIC21.23■□□□□ 0.99
CCNFP41002 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.23■□□□□ 0.99
CCNFP41002 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCNFP41002 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCNFP41002 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCNFP41002 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.22■□□□□ 0.99
CCNFP41002 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CCNFP41002 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CCNFP41002 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.22■□□□□ 0.99
CCNFP41002 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.22■□□□□ 0.99
CCNFP41002 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CCNFP41002 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCNFP41002 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CCNFP41002 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.22■□□□□ 0.99
CCNFP41002 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.22■□□□□ 0.99
CCNFP41002 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.21■□□□□ 0.99
CCNFP41002 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CCNFP41002 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.21■□□□□ 0.99
CCNFP41002 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.21■□□□□ 0.99
CCNFP41002 IGHV3-19-201ENST00000521488 291 ntBASIC21.21■□□□□ 0.99
CCNFP41002 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.21■□□□□ 0.99
CCNFP41002 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
CCNFP41002 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CCNFP41002 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCNFP41002 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.2■□□□□ 0.98
CCNFP41002 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.2■□□□□ 0.98
CCNFP41002 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.2■□□□□ 0.98
CCNFP41002 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CCNFP41002 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 AL049796.1-201ENST00000565336 1766 ntBASIC21.2■□□□□ 0.98
CCNFP41002 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCNFP41002 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.19■□□□□ 0.98
CCNFP41002 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.19■□□□□ 0.98
CCNFP41002 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.19■□□□□ 0.98
CCNFP41002 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.19■□□□□ 0.98
CCNFP41002 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CCNFP41002 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
CCNFP41002 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.19■□□□□ 0.98
CCNFP41002 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.19■□□□□ 0.98
CCNFP41002 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCNFP41002 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.19■□□□□ 0.98
CCNFP41002 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCNFP41002 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms