Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPTA1P02549 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SPTA1P02549 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPTA1P02549 AL139125.2-201ENST00000623134 1869 ntBASIC19.28■□□□□ 0.68
SPTA1P02549 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.28■□□□□ 0.68
SPTA1P02549 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.28■□□□□ 0.68
SPTA1P02549 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
SPTA1P02549 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SPTA1P02549 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPTA1P02549 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.28■□□□□ 0.68
SPTA1P02549 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.28■□□□□ 0.68
SPTA1P02549 CYP2T3P-201ENST00000601990 817 ntBASIC19.28■□□□□ 0.68
SPTA1P02549 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.28■□□□□ 0.68
SPTA1P02549 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.28■□□□□ 0.68
SPTA1P02549 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SPTA1P02549 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.28■□□□□ 0.68
SPTA1P02549 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.28■□□□□ 0.68
SPTA1P02549 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPTA1P02549 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPTA1P02549 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPTA1P02549 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.27■□□□□ 0.68
SPTA1P02549 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.27■□□□□ 0.68
SPTA1P02549 RPPH1-201ENST00000516869 333 ntBASIC19.27■□□□□ 0.68
SPTA1P02549 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.27■□□□□ 0.68
SPTA1P02549 AC097493.4-201ENST00000641197 219 ntBASIC19.27■□□□□ 0.68
SPTA1P02549 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
SPTA1P02549 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPTA1P02549 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPTA1P02549 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SPTA1P02549 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.27■□□□□ 0.68
SPTA1P02549 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPTA1P02549 AL034346.1-201ENST00000568244 1277 ntBASIC19.27■□□□□ 0.68
SPTA1P02549 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.27■□□□□ 0.67
SPTA1P02549 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SPTA1P02549 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SPTA1P02549 AP004607.7-201ENST00000527152 1677 ntBASIC19.27■□□□□ 0.67
SPTA1P02549 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SPTA1P02549 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SPTA1P02549 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
SPTA1P02549 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.26■□□□□ 0.67
SPTA1P02549 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.26■□□□□ 0.67
SPTA1P02549 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
SPTA1P02549 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 OR7E47P-201ENST00000546390 1422 ntBASIC19.26■□□□□ 0.67
SPTA1P02549 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.26■□□□□ 0.67
SPTA1P02549 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.26■□□□□ 0.67
SPTA1P02549 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 AL591742.1-201ENST00000604433 565 ntBASIC19.26■□□□□ 0.67
SPTA1P02549 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.26■□□□□ 0.67
SPTA1P02549 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPTA1P02549 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SPTA1P02549 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SPTA1P02549 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.26■□□□□ 0.67
SPTA1P02549 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPTA1P02549 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SPTA1P02549 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.25■□□□□ 0.67
SPTA1P02549 AL359736.2-201ENST00000621992 437 ntBASIC19.25■□□□□ 0.67
SPTA1P02549 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SPTA1P02549 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPTA1P02549 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.25■□□□□ 0.67
SPTA1P02549 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPTA1P02549 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.25■□□□□ 0.67
SPTA1P02549 AC069544.1-201ENST00000609399 999 ntBASIC19.25■□□□□ 0.67
SPTA1P02549 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.25■□□□□ 0.67
SPTA1P02549 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.25■□□□□ 0.67
SPTA1P02549 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.25■□□□□ 0.67
SPTA1P02549 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPTA1P02549 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.25■□□□□ 0.67
SPTA1P02549 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SPTA1P02549 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
SPTA1P02549 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.24■□□□□ 0.67
SPTA1P02549 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 AC120498.10-201ENST00000621827 505 ntBASIC19.24■□□□□ 0.67
SPTA1P02549 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.24■□□□□ 0.67
SPTA1P02549 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPTA1P02549 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SPTA1P02549 ARMC10P1-201ENST00000313754 855 ntBASIC19.23■□□□□ 0.67
SPTA1P02549 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SPTA1P02549 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.23■□□□□ 0.67
SPTA1P02549 AL135905.2-201ENST00000584934 1404 ntBASIC19.23■□□□□ 0.67
SPTA1P02549 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPTA1P02549 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms