Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
COL3A1P02461 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC28.21■■■□□ 2.11
COL3A1P02461 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
COL3A1P02461 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL3A1P02461 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC28.21■■■□□ 2.11
COL3A1P02461 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL3A1P02461 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL3A1P02461 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL3A1P02461 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.21■■■□□ 2.11
COL3A1P02461 AC026185.1-201ENST00000445748 174 ntBASIC28.21■■■□□ 2.11
COL3A1P02461 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.21■■■□□ 2.11
COL3A1P02461 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC28.21■■■□□ 2.11
COL3A1P02461 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC28.21■■■□□ 2.11
COL3A1P02461 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC28.21■■■□□ 2.11
COL3A1P02461 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC28.21■■■□□ 2.11
COL3A1P02461 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
COL3A1P02461 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.11
COL3A1P02461 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
COL3A1P02461 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.11
COL3A1P02461 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
COL3A1P02461 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC28.2■■■□□ 2.11
COL3A1P02461 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL3A1P02461 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL3A1P02461 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL3A1P02461 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL3A1P02461 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL3A1P02461 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL3A1P02461 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL3A1P02461 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL3A1P02461 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
COL3A1P02461 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
COL3A1P02461 ME2-206ENST00000638410 2289 ntTSL 5 BASIC28.18■■■□□ 2.1
COL3A1P02461 ME2-210ENST00000639255 2262 ntTSL 5 BASIC28.18■■■□□ 2.1
COL3A1P02461 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
COL3A1P02461 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL3A1P02461 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
COL3A1P02461 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC28.18■■■□□ 2.1
COL3A1P02461 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC28.18■■■□□ 2.1
COL3A1P02461 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
COL3A1P02461 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
COL3A1P02461 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL3A1P02461 GOLGA2P6-201ENST00000340929 2049 ntBASIC28.18■■■□□ 2.1
COL3A1P02461 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC28.17■■■□□ 2.1
COL3A1P02461 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC28.17■■■□□ 2.1
COL3A1P02461 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC28.17■■■□□ 2.1
COL3A1P02461 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL3A1P02461 APTR-203ENST00000430801 583 ntTSL 5 BASIC28.17■■■□□ 2.1
COL3A1P02461 AC007322.4-201ENST00000509611 723 ntBASIC28.17■■■□□ 2.1
COL3A1P02461 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC28.17■■■□□ 2.1
COL3A1P02461 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
COL3A1P02461 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL3A1P02461 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC28.17■■■□□ 2.1
COL3A1P02461 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC28.16■■■□□ 2.1
COL3A1P02461 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC28.16■■■□□ 2.1
COL3A1P02461 POU5F1P4-201ENST00000413175 1085 ntBASIC28.16■■■□□ 2.1
COL3A1P02461 GUSBP6-202ENST00000438529 1198 ntBASIC28.16■■■□□ 2.1
COL3A1P02461 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.16■■■□□ 2.1
COL3A1P02461 PLLP-204ENST00000569059 665 ntTSL 3 BASIC28.16■■■□□ 2.1
COL3A1P02461 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC28.16■■■□□ 2.1
COL3A1P02461 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC28.16■■■□□ 2.1
COL3A1P02461 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL3A1P02461 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL3A1P02461 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
COL3A1P02461 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL3A1P02461 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC28.15■■■□□ 2.1
COL3A1P02461 RBM17P2-201ENST00000616397 1405 ntBASIC28.15■■■□□ 2.1
COL3A1P02461 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
COL3A1P02461 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL3A1P02461 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL3A1P02461 NARF-205ENST00000412079 1760 ntTSL 5 BASIC28.15■■■□□ 2.1
COL3A1P02461 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL3A1P02461 CYP2T1P-201ENST00000432607 1285 ntBASIC28.15■■■□□ 2.1
COL3A1P02461 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL3A1P02461 PPP1R14BP3-201ENST00000509033 445 ntBASIC28.15■■■□□ 2.1
COL3A1P02461 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
COL3A1P02461 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
COL3A1P02461 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
COL3A1P02461 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC28.14■■■□□ 2.1
COL3A1P02461 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
COL3A1P02461 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
COL3A1P02461 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
COL3A1P02461 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
COL3A1P02461 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
COL3A1P02461 METTL26-203ENST00000397664 604 ntTSL 2 BASIC28.14■■■□□ 2.09
COL3A1P02461 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC28.14■■■□□ 2.09
COL3A1P02461 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28.14■■■□□ 2.09
COL3A1P02461 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC28.14■■■□□ 2.09
COL3A1P02461 AC008175.2-201ENST00000612840 297 ntBASIC28.14■■■□□ 2.09
COL3A1P02461 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.14■■■□□ 2.09
COL3A1P02461 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC28.14■■■□□ 2.09
COL3A1P02461 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC28.14■■■□□ 2.09
COL3A1P02461 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL3A1P02461 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms