Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS4BO75351 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4BO75351 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS4BO75351 AC026471.6-201ENST00000622954 1905 ntBASIC20.66■□□□□ 0.9
VPS4BO75351 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS4BO75351 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VPS4BO75351 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 YBX1P1-201ENST00000445822 960 ntBASIC20.66■□□□□ 0.9
VPS4BO75351 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS4BO75351 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS4BO75351 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS4BO75351 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS4BO75351 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
VPS4BO75351 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS4BO75351 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4BO75351 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS4BO75351 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS4BO75351 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS4BO75351 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 AC004911.1-201ENST00000416316 871 ntBASIC20.65■□□□□ 0.9
VPS4BO75351 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS4BO75351 AC010141.3-201ENST00000456659 717 ntBASIC20.65■□□□□ 0.9
VPS4BO75351 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.65■□□□□ 0.9
VPS4BO75351 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS4BO75351 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4BO75351 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS4BO75351 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS4BO75351 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS4BO75351 OXCT2P1-201ENST00000447263 1535 ntBASIC20.64■□□□□ 0.9
VPS4BO75351 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS4BO75351 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.64■□□□□ 0.89
VPS4BO75351 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS4BO75351 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS4BO75351 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS4BO75351 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
VPS4BO75351 AL034346.1-201ENST00000568244 1277 ntBASIC20.64■□□□□ 0.89
VPS4BO75351 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS4BO75351 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS4BO75351 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4BO75351 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4BO75351 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4BO75351 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4BO75351 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
VPS4BO75351 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4BO75351 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS4BO75351 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4BO75351 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4BO75351 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS4BO75351 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4BO75351 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS4BO75351 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS4BO75351 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4BO75351 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4BO75351 MIR3181-201ENST00000578512 73 ntBASIC20.63■□□□□ 0.89
VPS4BO75351 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS4BO75351 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
VPS4BO75351 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4BO75351 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS4BO75351 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 AC126544.1-201ENST00000580842 1059 ntBASIC20.62■□□□□ 0.89
VPS4BO75351 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VPS4BO75351 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4BO75351 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS4BO75351 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VPS4BO75351 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4BO75351 AF106564.1-201ENST00000607058 2553 ntBASIC20.61■□□□□ 0.89
VPS4BO75351 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS4BO75351 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
VPS4BO75351 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS4BO75351 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
VPS4BO75351 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
VPS4BO75351 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS4BO75351 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS4BO75351 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS4BO75351 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms