Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.18■□□□□ 0.82
PIF1Q9H611 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.18■□□□□ 0.82
PIF1Q9H611 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.17■□□□□ 0.82
PIF1Q9H611 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
PIF1Q9H611 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.17■□□□□ 0.82
PIF1Q9H611 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.17■□□□□ 0.82
PIF1Q9H611 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.17■□□□□ 0.82
PIF1Q9H611 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.17■□□□□ 0.82
PIF1Q9H611 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PIF1Q9H611 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.17■□□□□ 0.82
PIF1Q9H611 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.17■□□□□ 0.82
PIF1Q9H611 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 LINC01006-201ENST00000333319 2292 ntBASIC20.16■□□□□ 0.82
PIF1Q9H611 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 AL356740.2-201ENST00000601559 647 ntBASIC20.16■□□□□ 0.82
PIF1Q9H611 AC241377.3-202ENST00000626088 1088 ntBASIC20.16■□□□□ 0.82
PIF1Q9H611 AC241585.3-202ENST00000628937 1088 ntBASIC20.16■□□□□ 0.82
PIF1Q9H611 AC245100.8-202ENST00000629247 1058 ntBASIC20.16■□□□□ 0.82
PIF1Q9H611 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.16■□□□□ 0.82
PIF1Q9H611 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.16■□□□□ 0.82
PIF1Q9H611 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PIF1Q9H611 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PIF1Q9H611 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PIF1Q9H611 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PIF1Q9H611 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PIF1Q9H611 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.15■□□□□ 0.82
PIF1Q9H611 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.15■□□□□ 0.82
PIF1Q9H611 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.15■□□□□ 0.82
PIF1Q9H611 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PIF1Q9H611 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
PIF1Q9H611 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PIF1Q9H611 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PIF1Q9H611 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.15■□□□□ 0.82
PIF1Q9H611 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PIF1Q9H611 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PIF1Q9H611 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
PIF1Q9H611 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PIF1Q9H611 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PIF1Q9H611 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PIF1Q9H611 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PIF1Q9H611 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PIF1Q9H611 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PIF1Q9H611 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.14■□□□□ 0.81
PIF1Q9H611 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.14■□□□□ 0.81
PIF1Q9H611 MIR3621-201ENST00000580529 85 ntBASIC20.14■□□□□ 0.81
PIF1Q9H611 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PIF1Q9H611 AC099791.2-201ENST00000605725 427 ntBASIC20.14■□□□□ 0.81
PIF1Q9H611 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.14■□□□□ 0.81
PIF1Q9H611 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.14■□□□□ 0.81
PIF1Q9H611 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PIF1Q9H611 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
PIF1Q9H611 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.13■□□□□ 0.81
PIF1Q9H611 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.13■□□□□ 0.81
PIF1Q9H611 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.13■□□□□ 0.81
PIF1Q9H611 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.13■□□□□ 0.81
PIF1Q9H611 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PIF1Q9H611 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PIF1Q9H611 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.13■□□□□ 0.81
PIF1Q9H611 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.13■□□□□ 0.81
PIF1Q9H611 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PIF1Q9H611 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PIF1Q9H611 LINC01521-201ENST00000504184 1943 ntBASIC20.13■□□□□ 0.81
PIF1Q9H611 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.13■□□□□ 0.81
PIF1Q9H611 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.13■□□□□ 0.81
PIF1Q9H611 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PIF1Q9H611 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.12■□□□□ 0.81
PIF1Q9H611 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms