Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
LIME1Q9H400 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
LIME1Q9H400 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 AC007322.1-201ENST00000426983 750 ntBASIC18.63■□□□□ 0.57
LIME1Q9H400 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LIME1Q9H400 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.63■□□□□ 0.57
LIME1Q9H400 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.63■□□□□ 0.57
LIME1Q9H400 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.63■□□□□ 0.57
LIME1Q9H400 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.63■□□□□ 0.57
LIME1Q9H400 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.63■□□□□ 0.57
LIME1Q9H400 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.63■□□□□ 0.57
LIME1Q9H400 AC231657.2-201ENST00000624556 255 ntBASIC18.63■□□□□ 0.57
LIME1Q9H400 AC068587.7-201ENST00000641602 218 ntBASIC18.63■□□□□ 0.57
LIME1Q9H400 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.63■□□□□ 0.57
LIME1Q9H400 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
LIME1Q9H400 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIME1Q9H400 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LIME1Q9H400 AC139530.1-201ENST00000575312 1977 ntBASIC18.62■□□□□ 0.57
LIME1Q9H400 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.62■□□□□ 0.57
LIME1Q9H400 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.62■□□□□ 0.57
LIME1Q9H400 AC069152.1-201ENST00000438030 544 ntBASIC18.62■□□□□ 0.57
LIME1Q9H400 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.62■□□□□ 0.57
LIME1Q9H400 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.62■□□□□ 0.57
LIME1Q9H400 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.62■□□□□ 0.57
LIME1Q9H400 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIME1Q9H400 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.62■□□□□ 0.57
LIME1Q9H400 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
LIME1Q9H400 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.62■□□□□ 0.57
LIME1Q9H400 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.62■□□□□ 0.57
LIME1Q9H400 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIME1Q9H400 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 AL353803.4-201ENST00000565882 1934 ntBASIC18.61■□□□□ 0.57
LIME1Q9H400 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.61■□□□□ 0.57
LIME1Q9H400 FAM201B-201ENST00000458407 597 ntBASIC18.61■□□□□ 0.57
LIME1Q9H400 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.61■□□□□ 0.57
LIME1Q9H400 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.61■□□□□ 0.57
LIME1Q9H400 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIME1Q9H400 UBE2DNL-204ENST00000602536 740 ntBASIC18.61■□□□□ 0.57
LIME1Q9H400 AC087239.1-201ENST00000622671 572 ntBASIC18.61■□□□□ 0.57
LIME1Q9H400 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIME1Q9H400 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.6■□□□□ 0.57
LIME1Q9H400 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.6■□□□□ 0.57
LIME1Q9H400 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.6■□□□□ 0.57
LIME1Q9H400 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIME1Q9H400 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.6■□□□□ 0.57
LIME1Q9H400 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.6■□□□□ 0.57
LIME1Q9H400 SLC29A4P1-201ENST00000398760 971 ntBASIC18.6■□□□□ 0.57
LIME1Q9H400 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.6■□□□□ 0.57
LIME1Q9H400 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.6■□□□□ 0.57
LIME1Q9H400 AC093827.2-201ENST00000512654 315 ntBASIC18.6■□□□□ 0.57
LIME1Q9H400 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LIME1Q9H400 AC008687.6-201ENST00000596318 630 ntBASIC18.6■□□□□ 0.57
LIME1Q9H400 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.6■□□□□ 0.57
LIME1Q9H400 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.6■□□□□ 0.57
LIME1Q9H400 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIME1Q9H400 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LIME1Q9H400 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LIME1Q9H400 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LIME1Q9H400 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIME1Q9H400 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.59■□□□□ 0.57
LIME1Q9H400 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIME1Q9H400 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms