Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 SUDS3P1-201ENST00000505831 966 ntBASIC20.9■□□□□ 0.94
TRIM54Q9BYV2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
TRIM54Q9BYV2 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM54Q9BYV2 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM54Q9BYV2 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM54Q9BYV2 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM54Q9BYV2 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 MIR572-201ENST00000384983 95 ntBASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 AC244015.2-201ENST00000616358 1861 ntBASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM54Q9BYV2 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM54Q9BYV2 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 AC009237.3-201ENST00000393279 1427 ntBASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM54Q9BYV2 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 AC005837.3-201ENST00000612163 286 ntBASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM54Q9BYV2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM54Q9BYV2 AC026471.6-201ENST00000622954 1905 ntBASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM54Q9BYV2 AP006587.3-201ENST00000525742 1516 ntBASIC20.83■□□□□ 0.93
TRIM54Q9BYV2 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM54Q9BYV2 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
TRIM54Q9BYV2 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms