Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 AIM11YER093C-A 414 nt3.6□□□□□ -1.83
UPF3P48412 LIF1YGL090W 1266 nt3.6□□□□□ -1.83
UPF3P48412 BRR6YGL247W 594 nt3.6□□□□□ -1.83
UPF3P48412 YGR051CYGR051C 324 nt3.6□□□□□ -1.83
UPF3P48412 YKL065W-AYKL065W-A 222 nt3.6□□□□□ -1.83
UPF3P48412 MBR1YKL093W 1020 nt3.6□□□□□ -1.83
UPF3P48412 RPC25YKL144C 639 nt3.6□□□□□ -1.83
UPF3P48412 RPN13YLR421C 471 nt3.6□□□□□ -1.83
UPF3P48412 ERG2YMR202W 669 nt3.6□□□□□ -1.83
UPF3P48412 YBL055CYBL055C 1257 nt3.6□□□□□ -1.83
UPF3P48412 TSR4YOL022C 1227 nt3.6□□□□□ -1.83
UPF3P48412 TPT1YOL102C 693 nt3.6□□□□□ -1.83
UPF3P48412 MCA1YOR197W 1299 nt3.6□□□□□ -1.83
UPF3P48412 AIP1YMR092C 1848 nt3.6□□□□□ -1.83
UPF3P48412 HBT1YDL223C 3141 nt3.59□□□□□ -1.83
UPF3P48412 MYO5YMR109W 3660 nt3.59□□□□□ -1.83
UPF3P48412 NKP1YDR383C 717 nt3.59□□□□□ -1.83
UPF3P48412 MFA1YDR461W 111 nt3.59□□□□□ -1.83
UPF3P48412 YGL041W-AYGL041W-A 465 nt3.59□□□□□ -1.83
UPF3P48412 GPX1YKL026C 504 nt3.59□□□□□ -1.83
UPF3P48412 SFH1YLR321C 1281 nt3.59□□□□□ -1.83
UPF3P48412 ASI2YNL159C 870 nt3.59□□□□□ -1.83
UPF3P48412 OSW1YOR255W 837 nt3.59□□□□□ -1.83
UPF3P48412 UTP5YDR398W 1932 nt3.59□□□□□ -1.83
UPF3P48412 LTV1YKL143W 1392 nt3.59□□□□□ -1.83
UPF3P48412 CIN1YOR349W 3045 nt3.59□□□□□ -1.84
UPF3P48412 PIG2YIL045W 1617 nt3.59□□□□□ -1.84
UPF3P48412 VBA4YDR119W 2307 nt3.58□□□□□ -1.84
UPF3P48412 ATP16YDL004W 483 nt3.58□□□□□ -1.84
UPF3P48412 HTB1YDR224C 396 nt3.58□□□□□ -1.84
UPF3P48412 YGL214WYGL214W 486 nt3.58□□□□□ -1.84
UPF3P48412 SOP4YJL192C 705 nt3.58□□□□□ -1.84
UPF3P48412 COQ5YML110C 924 nt3.58□□□□□ -1.84
UPF3P48412 RRP36YOR287C 903 nt3.58□□□□□ -1.84
UPF3P48412 PNG1YPL096W 1092 nt3.58□□□□□ -1.84
UPF3P48412 URA2YJL130C 6645 nt3.58□□□□□ -1.84
UPF3P48412 APE2YKL157W 2859 nt3.58□□□□□ -1.84
UPF3P48412 YGL176CYGL176C 1665 nt3.58□□□□□ -1.84
UPF3P48412 KRI1YNL308C 1776 nt3.58□□□□□ -1.84
UPF3P48412 YBR259WYBR259W 2067 nt3.58□□□□□ -1.84
UPF3P48412 SPA2YLL021W 4401 nt3.58□□□□□ -1.84
UPF3P48412 FMN1YDR236C 657 nt3.57□□□□□ -1.84
UPF3P48412 COBQ0105 1158 nt3.57□□□□□ -1.84
UPF3P48412 MAM1YER106W 909 nt3.57□□□□□ -1.84
UPF3P48412 SEC4YFL005W 648 nt3.57□□□□□ -1.84
UPF3P48412 YFH7YFR007W 1062 nt3.57□□□□□ -1.84
UPF3P48412 CNN1YFR046C 1086 nt3.57□□□□□ -1.84
UPF3P48412 Q0255Q0255 1419 nt3.57□□□□□ -1.84
UPF3P48412 COX3Q0275 810 nt3.57□□□□□ -1.84
UPF3P48412 YKL156C-AYKL156C-A 117 nt3.57□□□□□ -1.84
UPF3P48412 FLD1YLR404W 858 nt3.57□□□□□ -1.84
UPF3P48412 TEM1YML064C 738 nt3.57□□□□□ -1.84
UPF3P48412 SLM4YBR077C 489 nt3.57□□□□□ -1.84
UPF3P48412 XRN1YGL173C 4587 nt3.57□□□□□ -1.84
UPF3P48412 SET1YHR119W 3243 nt3.57□□□□□ -1.84
UPF3P48412 CDC45YLR103C 1953 nt3.56□□□□□ -1.84
UPF3P48412 HFM1YGL251C 3564 nt3.56□□□□□ -1.84
UPF3P48412 RAD5YLR032W 3510 nt3.56□□□□□ -1.84
UPF3P48412 CDC40YDR364C 1368 nt3.56□□□□□ -1.84
UPF3P48412 TRX3YCR083W 384 nt3.56□□□□□ -1.84
UPF3P48412 YDL050CYDL050C 372 nt3.56□□□□□ -1.84
UPF3P48412 RPL13AYDL082W 600 nt3.56□□□□□ -1.84
UPF3P48412 ATC1YDR184C 885 nt3.56□□□□□ -1.84
UPF3P48412 RPS23AYGR118W 438 nt3.56□□□□□ -1.84
UPF3P48412 CTK2YJL006C 972 nt3.56□□□□□ -1.84
UPF3P48412 CDC8YJR057W 651 nt3.56□□□□□ -1.84
UPF3P48412 YOL114CYOL114C 609 nt3.56□□□□□ -1.84
UPF3P48412 RPS23BYPR132W 438 nt3.56□□□□□ -1.84
UPF3P48412 CST9YLR394W 1449 nt3.55□□□□□ -1.84
UPF3P48412 ERP3YDL018C 678 nt3.55□□□□□ -1.84
UPF3P48412 PEX10YDR265W 1014 nt3.55□□□□□ -1.84
UPF3P48412 DIG2YDR480W 972 nt3.55□□□□□ -1.84
UPF3P48412 SMX2YFL017W-A 234 nt3.55□□□□□ -1.84
UPF3P48412 UPF3YGR072W 1164 nt3.55□□□□□ -1.84
UPF3P48412 PAU13YHL046C 363 nt3.55□□□□□ -1.84
UPF3P48412 GTT2YLL060C 702 nt3.55□□□□□ -1.84
UPF3P48412 RPS30AYLR287C-A 192 nt3.55□□□□□ -1.84
UPF3P48412 KAR4YCL055W 1008 nt3.55□□□□□ -1.84
UPF3P48412 FYV5YCL058C 459 nt3.55□□□□□ -1.84
UPF3P48412 TDA1YMR291W 1761 nt3.55□□□□□ -1.84
UPF3P48412 MNT4YNR059W 1743 nt3.55□□□□□ -1.84
UPF3P48412 YPS6YIR039C 1614 nt3.55□□□□□ -1.84
UPF3P48412 HEF3YNL014W 3135 nt3.55□□□□□ -1.84
UPF3P48412 YBP2YGL060W 1926 nt3.54□□□□□ -1.84
UPF3P48412 MDM36YPR083W 1740 nt3.54□□□□□ -1.84
UPF3P48412 YDR526CYDR526C 471 nt3.54□□□□□ -1.84
UPF3P48412 BCD1YHR040W 1101 nt3.54□□□□□ -1.84
UPF3P48412 DPH1YIL103W 1278 nt3.54□□□□□ -1.84
UPF3P48412 YBL068W-AYBL068W-A 237 nt3.54□□□□□ -1.84
UPF3P48412 RFC5YBR087W 1065 nt3.54□□□□□ -1.84
UPF3P48412 APD1YBR151W 951 nt3.54□□□□□ -1.84
UPF3P48412 SRP1YNL189W 1629 nt3.54□□□□□ -1.84
UPF3P48412 SRP68YPL243W 1800 nt3.54□□□□□ -1.84
UPF3P48412 RNT1YMR239C 1416 nt3.53□□□□□ -1.84
UPF3P48412 NGG1YDR176W 2109 nt3.53□□□□□ -1.84
UPF3P48412 OSH3YHR073W 2991 nt3.53□□□□□ -1.84
UPF3P48412 TAF1YGR274C 3201 nt3.53□□□□□ -1.84
UPF3P48412 YDR271CYDR271C 372 nt3.53□□□□□ -1.84
UPF3P48412 YKL115CYKL115C 393 nt3.53□□□□□ -1.84
UPF3P48412 SMD2YLR275W 333 nt3.53□□□□□ -1.84
Retrieved 100 of 7,029 protein–RNA pairs in 38 ms