Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
SOX3P41225 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
SOX3P41225 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.89■□□□□ 0.77
SOX3P41225 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.89■□□□□ 0.77
SOX3P41225 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.89■□□□□ 0.77
SOX3P41225 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.89■□□□□ 0.77
SOX3P41225 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 KRT18P5-201ENST00000436075 1291 ntBASIC19.89■□□□□ 0.77
SOX3P41225 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.89■□□□□ 0.77
SOX3P41225 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SOX3P41225 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.89■□□□□ 0.77
SOX3P41225 AC092666.2-201ENST00000613287 246 ntBASIC19.89■□□□□ 0.77
SOX3P41225 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.89■□□□□ 0.77
SOX3P41225 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SOX3P41225 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SOX3P41225 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SOX3P41225 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.88■□□□□ 0.77
SOX3P41225 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.88■□□□□ 0.77
SOX3P41225 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
SOX3P41225 OR7E47P-201ENST00000546390 1422 ntBASIC19.88■□□□□ 0.77
SOX3P41225 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
SOX3P41225 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.88■□□□□ 0.77
SOX3P41225 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.88■□□□□ 0.77
SOX3P41225 AC026310.3-201ENST00000625186 2373 ntBASIC19.88■□□□□ 0.77
SOX3P41225 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.88■□□□□ 0.77
SOX3P41225 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SOX3P41225 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.87■□□□□ 0.77
SOX3P41225 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SOX3P41225 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.87■□□□□ 0.77
SOX3P41225 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.87■□□□□ 0.77
SOX3P41225 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.87■□□□□ 0.77
SOX3P41225 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.87■□□□□ 0.77
SOX3P41225 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
SOX3P41225 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SOX3P41225 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.86■□□□□ 0.77
SOX3P41225 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.86■□□□□ 0.77
SOX3P41225 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SOX3P41225 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.86■□□□□ 0.77
SOX3P41225 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SOX3P41225 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SOX3P41225 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.86■□□□□ 0.77
SOX3P41225 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SOX3P41225 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.86■□□□□ 0.77
SOX3P41225 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SOX3P41225 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SOX3P41225 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.85■□□□□ 0.77
SOX3P41225 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.85■□□□□ 0.77
SOX3P41225 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SOX3P41225 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.85■□□□□ 0.77
SOX3P41225 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.85■□□□□ 0.77
SOX3P41225 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SOX3P41225 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
SOX3P41225 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms