Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A1P20908 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A1P20908 AC097658.1-201ENST00000475555 843 ntBASIC20.56■□□□□ 0.88
COL5A1P20908 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A1P20908 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A1P20908 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A1P20908 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A1P20908 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A1P20908 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A1P20908 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.56■□□□□ 0.88
COL5A1P20908 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A1P20908 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL5A1P20908 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A1P20908 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A1P20908 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.55■□□□□ 0.88
COL5A1P20908 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A1P20908 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A1P20908 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A1P20908 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
COL5A1P20908 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.55■□□□□ 0.88
COL5A1P20908 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A1P20908 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.55■□□□□ 0.88
COL5A1P20908 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A1P20908 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A1P20908 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A1P20908 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.55■□□□□ 0.88
COL5A1P20908 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
COL5A1P20908 AC243732.1-201ENST00000612648 864 ntBASIC20.55■□□□□ 0.88
COL5A1P20908 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL5A1P20908 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A1P20908 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.54■□□□□ 0.88
COL5A1P20908 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A1P20908 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A1P20908 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.54■□□□□ 0.88
COL5A1P20908 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.54■□□□□ 0.88
COL5A1P20908 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL5A1P20908 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
COL5A1P20908 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.53■□□□□ 0.88
COL5A1P20908 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 UNC93B5-201ENST00000530315 699 ntBASIC20.53■□□□□ 0.88
COL5A1P20908 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.53■□□□□ 0.88
COL5A1P20908 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL5A1P20908 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL5A1P20908 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.53■□□□□ 0.88
COL5A1P20908 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.53■□□□□ 0.88
COL5A1P20908 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A1P20908 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A1P20908 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A1P20908 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A1P20908 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A1P20908 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A1P20908 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
COL5A1P20908 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A1P20908 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A1P20908 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A1P20908 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A1P20908 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.52■□□□□ 0.88
COL5A1P20908 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.52■□□□□ 0.88
COL5A1P20908 AC142381.4-202ENST00000563973 229 ntBASIC20.52■□□□□ 0.88
COL5A1P20908 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.52■□□□□ 0.88
COL5A1P20908 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.52■□□□□ 0.88
COL5A1P20908 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL5A1P20908 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL5A1P20908 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.52■□□□□ 0.87
COL5A1P20908 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A1P20908 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A1P20908 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A1P20908 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.51■□□□□ 0.87
COL5A1P20908 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A1P20908 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A1P20908 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A1P20908 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL5A1P20908 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.51■□□□□ 0.87
COL5A1P20908 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.51■□□□□ 0.87
COL5A1P20908 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A1P20908 AP006294.2-201ENST00000641667 209 ntBASIC20.5■□□□□ 0.87
COL5A1P20908 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.5■□□□□ 0.87
COL5A1P20908 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A1P20908 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
COL5A1P20908 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.5■□□□□ 0.87
COL5A1P20908 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A1P20908 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A1P20908 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
COL5A1P20908 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms