Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A3BPQ9Y5P4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL4A3BPQ9Y5P4 AC009237.3-201ENST00000393279 1427 ntBASIC23.84■■□□□ 1.41
COL4A3BPQ9Y5P4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 CLDN5-201ENST00000403084 2357 ntBASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL4A3BPQ9Y5P4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC23.83■■□□□ 1.4
COL4A3BPQ9Y5P4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
COL4A3BPQ9Y5P4 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
COL4A3BPQ9Y5P4 AC005224.4-201ENST00000583262 1652 ntBASIC23.83■■□□□ 1.4
COL4A3BPQ9Y5P4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL4A3BPQ9Y5P4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 COX20-201ENST00000366528 568 ntTSL 2 BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 FAM99A-202ENST00000538190 1989 ntBASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL4A3BPQ9Y5P4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 PXK-203ENST00000383715 1756 ntTSL 5 BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.8■■□□□ 1.4
COL4A3BPQ9Y5P4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 AC004854.2-201ENST00000608450 1441 ntBASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 AC079140.4-201ENST00000507448 529 ntBASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 AC092437.1-201ENST00000624794 1048 ntBASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 AP004607.4-201ENST00000530158 1459 ntBASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.79■■□□□ 1.4
COL4A3BPQ9Y5P4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL4A3BPQ9Y5P4 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL4A3BPQ9Y5P4 FBXW4P1-201ENST00000426721 2239 ntBASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms