Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS11Q9H270 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS11Q9H270 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS11Q9H270 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS11Q9H270 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS11Q9H270 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS11Q9H270 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS11Q9H270 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.34■■□□□ 1.01
VPS11Q9H270 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS11Q9H270 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS11Q9H270 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.34■■□□□ 1.01
VPS11Q9H270 AL035685.1-201ENST00000636663 812 ntBASIC21.34■■□□□ 1.01
VPS11Q9H270 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS11Q9H270 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS11Q9H270 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS11Q9H270 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS11Q9H270 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS11Q9H270 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS11Q9H270 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.34■■□□□ 1.01
VPS11Q9H270 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
VPS11Q9H270 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS11Q9H270 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS11Q9H270 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS11Q9H270 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS11Q9H270 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS11Q9H270 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS11Q9H270 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS11Q9H270 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.33■■□□□ 1.01
VPS11Q9H270 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.33■■□□□ 1
VPS11Q9H270 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
VPS11Q9H270 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.33■■□□□ 1
VPS11Q9H270 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
VPS11Q9H270 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
VPS11Q9H270 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
VPS11Q9H270 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
VPS11Q9H270 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
VPS11Q9H270 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.32■■□□□ 1
VPS11Q9H270 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
VPS11Q9H270 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.32■■□□□ 1
VPS11Q9H270 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.32■■□□□ 1
VPS11Q9H270 MIR3621-201ENST00000580529 85 ntBASIC21.32■■□□□ 1
VPS11Q9H270 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
VPS11Q9H270 AC068587.7-201ENST00000641602 218 ntBASIC21.32■■□□□ 1
VPS11Q9H270 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.32■■□□□ 1
VPS11Q9H270 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.32■■□□□ 1
VPS11Q9H270 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
VPS11Q9H270 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.31■■□□□ 1
VPS11Q9H270 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS11Q9H270 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS11Q9H270 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS11Q9H270 AC104564.3-201ENST00000582367 638 ntBASIC21.31■■□□□ 1
VPS11Q9H270 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
VPS11Q9H270 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS11Q9H270 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 AC092667.1-201ENST00000434301 2586 ntBASIC21.3■■□□□ 1
VPS11Q9H270 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 SRD5A1P1-201ENST00000442297 786 ntBASIC21.3■■□□□ 1
VPS11Q9H270 OR2I1P-207ENST00000453522 948 ntBASIC21.3■■□□□ 1
VPS11Q9H270 AC087239.1-201ENST00000622671 572 ntBASIC21.3■■□□□ 1
VPS11Q9H270 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VPS11Q9H270 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
VPS11Q9H270 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS11Q9H270 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.3■■□□□ 1
VPS11Q9H270 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.3■■□□□ 1
VPS11Q9H270 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
VPS11Q9H270 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS11Q9H270 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS11Q9H270 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.29■■□□□ 1
VPS11Q9H270 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.29■■□□□ 1
VPS11Q9H270 GUSBP5-201ENST00000418136 578 ntBASIC21.29■■□□□ 1
VPS11Q9H270 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.29■■□□□ 1
VPS11Q9H270 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.29■■□□□ 1
VPS11Q9H270 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS11Q9H270 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS11Q9H270 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms