Protein–RNA interactions for Protein: Q96PE6

ZIM3, Zinc finger imprinted 3, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIM3Q96PE6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZIM3Q96PE6 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZIM3Q96PE6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 AC079089.2-201ENST00000531211 1277 ntBASIC21.74■■□□□ 1.07
ZIM3Q96PE6 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZIM3Q96PE6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZIM3Q96PE6 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 ABHD17AP5-201ENST00000580133 923 ntBASIC21.72■■□□□ 1.07
ZIM3Q96PE6 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.72■■□□□ 1.07
ZIM3Q96PE6 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZIM3Q96PE6 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 NTF6A-201ENST00000591175 560 ntBASIC21.71■■□□□ 1.07
ZIM3Q96PE6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
ZIM3Q96PE6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
ZIM3Q96PE6 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.07
ZIM3Q96PE6 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.7■■□□□ 1.07
ZIM3Q96PE6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZIM3Q96PE6 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZIM3Q96PE6 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.69■■□□□ 1.06
ZIM3Q96PE6 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.69■■□□□ 1.06
ZIM3Q96PE6 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZIM3Q96PE6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms