Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS50Q96JG6 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS50Q96JG6 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS50Q96JG6 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
VPS50Q96JG6 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS50Q96JG6 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
VPS50Q96JG6 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
VPS50Q96JG6 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS50Q96JG6 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS50Q96JG6 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS50Q96JG6 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VPS50Q96JG6 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VPS50Q96JG6 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS50Q96JG6 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS50Q96JG6 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.66■□□□□ 0.9
VPS50Q96JG6 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
VPS50Q96JG6 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS50Q96JG6 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS50Q96JG6 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS50Q96JG6 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 YBX1P1-201ENST00000445822 960 ntBASIC20.65■□□□□ 0.9
VPS50Q96JG6 AC092666.2-201ENST00000613287 246 ntBASIC20.65■□□□□ 0.9
VPS50Q96JG6 AC087239.1-201ENST00000622671 572 ntBASIC20.65■□□□□ 0.9
VPS50Q96JG6 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS50Q96JG6 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS50Q96JG6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS50Q96JG6 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS50Q96JG6 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.64■□□□□ 0.9
VPS50Q96JG6 AC087742.1-201ENST00000575880 1738 ntBASIC20.64■□□□□ 0.9
VPS50Q96JG6 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS50Q96JG6 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS50Q96JG6 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS50Q96JG6 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS50Q96JG6 AC034268.1-201ENST00000441047 882 ntBASIC20.64■□□□□ 0.89
VPS50Q96JG6 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS50Q96JG6 FAM99A-202ENST00000538190 1989 ntBASIC20.64■□□□□ 0.89
VPS50Q96JG6 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
VPS50Q96JG6 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS50Q96JG6 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS50Q96JG6 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS50Q96JG6 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS50Q96JG6 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
VPS50Q96JG6 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
VPS50Q96JG6 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS50Q96JG6 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS50Q96JG6 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS50Q96JG6 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS50Q96JG6 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS50Q96JG6 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS50Q96JG6 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS50Q96JG6 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VPS50Q96JG6 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS50Q96JG6 AC027612.3-201ENST00000413684 1047 ntBASIC20.63■□□□□ 0.89
VPS50Q96JG6 AC123595.1-201ENST00000440769 1046 ntBASIC20.63■□□□□ 0.89
VPS50Q96JG6 AC012414.1-201ENST00000556676 535 ntBASIC20.63■□□□□ 0.89
VPS50Q96JG6 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms